(Q34202967)

31 July 2017

title

Synonymous codon ordering: a subtle but prevalent strategy of bacteria to improve translational efficiency (English)

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31 July 2017

Zhu-Qing Shao

1

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author name string

Yan-Mei Zhang

2

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31 July 2017

Xue-Ying Feng

3

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31 July 2017

Bin Wang

4

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31 July 2017

Jian-Qun Chen

5

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31 July 2017

language of work or name

English

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publication date

14 March 2012

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31 July 2017

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31 July 2017

volume

7

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31 July 2017

issue

3

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31 July 2017

page(s)

e33547

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Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

14 March 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Synonymous but not the same: the causes and consequences of codon bias

5 July 2018

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Young proteins experience more variable selection pressures than old proteins

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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An evolutionarily conserved mechanism for controlling the efficiency of protein translation

5 July 2018

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5 July 2018

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Translation efficiency is determined by both codon bias and folding energy

5 July 2018

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5 July 2018

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Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes

5 July 2018

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Design parameters to control synthetic gene expression in Escherichia coli

5 July 2018

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Coding-sequence determinants of gene expression in Escherichia coli

5 July 2018

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Virus attenuation by genome-scale changes in codon pair bias

5 July 2018

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An important role for the multienzyme aminoacyl-tRNA synthetase complex in mammalian translation and cell growth

5 July 2018

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The wobble hypothesis revisited: uridine-5-oxyacetic acid is critical for reading of G-ending codons

5 July 2018

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5 July 2018

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tRNA's wobble decoding of the genome: 40 years of modification

5 July 2018

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Comparative context analysis of codon pairs on an ORFeome scale

5 July 2018

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5 July 2018

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The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAPro(cmo5UGG) promotes reading of all four proline codons in vivo

5 July 2018

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Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome

5 July 2018

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tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

5 July 2018

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5 July 2018

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

5 July 2018

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Codon-reading specificity of an unmodified form of Escherichia coli tRNA1Ser in cell-free protein synthesis.

5 July 2018

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A channeled tRNA cycle during mammalian protein synthesis

5 July 2018

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Codon pair utilization biases influence translational elongation step times

5 July 2018

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Codon catalog usage is a genome strategy modulated for gene expressivity

5 July 2018

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Codon catalog usage and the genome hypothesis

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Codon usage and tRNA content in unicellular and multicellular organisms

5 July 2018

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Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Nonrandom utilization of codon pairs in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Rates of aminoacyl-tRNA selection at 29 sense codons in vivo.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Channeling of aminoacyl-tRNA for protein synthesis in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

A role for mRNA secondary structure in the control of translation initiation.

5 July 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033547

Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033547

Novel complexes of mammalian translation elongation factor eEF1A.GDP with uncharged tRNA and aminoacyl-tRNA synthetase. Implications for tRNA channeling

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033547

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033547

Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033547

Comparative genomic and phylogeographic analysis of Mycobacterium leprae

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303843

Uridin-5-oxy acetic acid: a new minor constituent from E. coli valine transfer RNA I

28 October 2018

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12 December 2020

Presumed anticodon structure of glutamic acid tRNA from E. coli: A possible location of a 2-thiouridine derivative in teh first position of the anticodon

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12 December 2020

Contextual constraints on codon pair usage: structural and biological implications

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12 December 2020

Functional evidence for indirect recognition of G.U in tRNA(Ala) by alanyl-tRNA synthetase

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12 December 2020

Codon Reading by tRNAAla with Modified Uridine in the Wobble Position

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12 December 2020

Binding of aminoacyl transfer ribonucleic acid synthetases to ribosomes from rabbit reticulocytes

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12 December 2020

10.1371/JOURNAL.PONE.0033547

Identifiers

DOI

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31 July 2017

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31 July 2017

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