(Q34214509)

31 July 2017

1 reference

title

The energetics of small internal loops in RNA. (English)

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ORCID Public Data File 2021

31 July 2017

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author name string

Schroeder SJ

series ordinal

1

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31 July 2017

Burkard ME

series ordinal

2

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31 July 2017

Turner DH

series ordinal

3

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31 July 2017

language of work or name

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1 January 1999

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31 July 2017

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31 July 2017

volume

52

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31 July 2017

issue

4

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31 July 2017

page(s)

157-167

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Estimation of Secondary Structure in Ribonucleic Acids

31 July 2017

cites work

1 reference

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21 January 2018

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Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

21 January 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops.

21 January 2018

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Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces

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21 January 2018

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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

21 January 2018

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21 January 2018

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Derivation of nearest-neighbor properties from data on nucleic acid oligomers. I. Simple sets of independent sequences and the influence of absent nearest neighbors

21 January 2018

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Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

21 January 2018

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A model of the iron responsive element RNA hairpin loop structure determined from NMR and thermodynamic data

21 January 2018

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Isolation and characterization of thermodynamically stable and unstable RNA hairpins from a triloop combinatorial library

21 January 2018

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Crystal structure of a group I ribozyme domain: principles of RNA packing

21 January 2018

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NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA

21 January 2018

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Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex

21 January 2018

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Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide

21 January 2018

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Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA

21 January 2018

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Interaction of antibiotics with functional sites in 16S ribosomal RNA

21 January 2018

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Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

21 January 2018

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Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

21 January 2018

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21 January 2018

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Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach

21 January 2018

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Structure of an RNA double helix including uracil-uracil base pairs in an internal loop

21 January 2018

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21 January 2018

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Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex

21 January 2018

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21 January 2018

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Solution structure of a GAAA tetraloop receptor RNA

21 January 2018

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Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic

21 January 2018

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Solution structure of the loop B domain from the hairpin ribozyme

21 January 2018

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NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein

21 January 2018

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Structure of the phylogenetically most conserved domain of SRP RNA.

21 January 2018

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21 January 2018

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The major HIV-1 packaging signal is an extended bulged stem loop whose structure is altered on interaction with the Gag polyprotein

21 January 2018

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Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA

21 January 2018

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21 January 2018

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Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy

21 January 2018

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Thermodynamic prediction of conserved secondary structure: application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein

21 January 2018

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21 January 2018

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21 January 2018

RNA structure prediction

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Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site

21 January 2018

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The automated chemical synthesis of long oligoribuncleotides using 2'-O-silylated ribonucleoside 3'-O-phosphoramidites on a controlled-pore glass support: synthesis of a 43-nucleotide sequence similar to the 3'-half molecule of an Escherichia coli fo

21 January 2018

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Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

21 January 2018

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Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs

21 January 2018

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Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text]

21 January 2018

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The stability and structure of tandem GA mismatches in RNA depend on closing base pairs

21 January 2018

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A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides

21 January 2018

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G.A and U.U mismatches can stabilize RNA internal loops of three nucleotides

21 January 2018

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Thermodynamics of nonsymmetric tandem mismatches adjacent to G.C base pairs in RNA

21 January 2018

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Thermodynamics of single mismatches in RNA duplexes

21 January 2018

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Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA

21 January 2018

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Improved parameters for the prediction of RNA hairpin stability

21 January 2018

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Stability of RNA hairpins closed by wobble base pairs

21 January 2018

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Structure of the polyadenylation regulatory element of the human U1A pre-mRNA 3'-untranslated region and interaction with the U1A protein

21 January 2018

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Binding of neomycin-class aminoglycoside antibiotics to the A-site of 16 S rRNA

21 January 2018

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Solution structure of (rGGCAGGCC)2 by two-dimensional NMR and the iterative relaxation matrix approach

21 January 2018

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The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites

21 January 2018

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The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent

21 January 2018

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Order, dynamics and metal-binding in the lead-dependent ribozyme

21 January 2018

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A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex

21 January 2018

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10.1002/1097-0282(1999)52:4<157::AID-BIP1001>3.0.CO;2-E

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

1 reference