(Q34228223)

31 July 2017

title

How fast-folding proteins fold (English)

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31 July 2017

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Kresten Lindorff-Larsen

object named as

Kresten Lindorff-Larsen

series ordinal

1

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Ron Ofer Dror

series ordinal

3

object named as

Ron O Dror

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31 July 2017

Stefano Piana

2

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31 July 2017

David E Shaw

series ordinal

4

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31 July 2017

language of work or name

English

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publication date

1 October 2011

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31 July 2017

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31 July 2017

volume

334

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31 July 2017

issue

6055

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31 July 2017

page(s)

517-520

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The folding of single domain proteins--have we reached a consensus?

31 July 2017

cites work

1 reference

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How robust are protein folding simulations with respect to force field parameterization?

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The protein folding 'speed limit'.

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Full-sequence computational design and solution structure of a thermostable protein variant

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Downhill versus barrier-limited folding of BBL 3. Heterogeneity of the native state of the BBL peripheral subunit binding domain and its implications for folding mechanisms

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Protein folding and the organization of the protein topology universe.

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Pathways for protein folding: is a new view needed?

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Parallel protein-unfolding pathways revealed and mapped

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Analysis of single molecule folding studies with replica correlation functions

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The limited role of nonnative contacts in the folding pathways of a lattice protein.

21 January 2018

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Protein folding and misfolding: mechanism and principles.

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Exploring folding free energy landscapes using computational protein design.

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Reaction coordinates and rates from transition paths

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Transition state contact orders correlate with protein folding rates.

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Kinetic barriers and the role of topology in protein and RNA folding

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Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications

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Transition states for protein folding have native topologies despite high structural variability

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Challenges in protein folding simulations: Timescale, representation, and analysis

21 January 2018

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The energy computation paradox and ab initio protein folding

21 January 2018

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Comparison of simple potential functions for simulating liquid water

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

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Knowledge-based protein secondary structure assignment

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Clustering by passing messages between data points

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A self-organizing principle for learning nonlinear manifolds

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Contact order, transition state placement and the refolding rates of single domain proteins.

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From transition paths to transition states and rate coefficients.

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THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures

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Crystal structure of a ten-amino acid protein

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Canonical dynamics: Equilibrium phase-space distributions

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Gaussian split Ewald: A fast Ewald mesh method for molecular simulation

21 January 2018

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The Trp-cage: optimizing the stability of a globular miniprotein

21 January 2018

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The beta-beta-alpha fold: explorations in sequence space

21 January 2018

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Sub-microsecond protein folding

21 January 2018

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Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data

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Computational design and experimental testing of the fastest-folding β-sheet protein

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The folding mechanism of BBL: Plasticity of transition-state structure observed within an ultrafast folding protein family

21 January 2018

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NMR and temperature-jump measurements of de novo designed proteins demonstrate rapid folding in the absence of explicit selection for kinetics

21 January 2018

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Computer-based redesign of a protein folding pathway

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Critical role of beta-hairpin formation in protein G folding.

21 January 2018

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Solution structure and dynamics of a de novo designed three-helix bundle protein

21 January 2018

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Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein

21 January 2018

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A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D.

21 January 2018

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Methionine oxidation of monomeric lambda repressor: the denatured state ensemble under nondenaturing conditions

21 January 2018

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Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

21 January 2018

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Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis

21 January 2018

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Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics

21 January 2018

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Folding at the speed limit

21 January 2018

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21 January 2018

Identifiers

DOI

10.1126/SCIENCE.1208351

1 reference

31 July 2017

1 reference