(Q34233893)

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Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by maxicircle MLST and next generation sequencing.

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29 January 2020

Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by maxicircle MLST and next generation sequencing (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22506081%20AND%20SRC:MED&resulttype=core&format=json

29 January 2020

Trypanosoma cruzi

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29 January 2020

Louisa A Messenger

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29 January 2020

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29 January 2020

Juan D Ramírez

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29 January 2020

Hernan J Carrasco

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29 January 2020

Bjorn Andersson

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29 January 2020

Martin S Llewellyn

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Martin S Llewellyn

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29 January 2020

Tapan Bhattacharyya

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Tapan Bhattacharyya

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29 January 2020

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Michael A Miles

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29 January 2020

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10 April 2012

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29 January 2020

PLoS Neglected Tropical Diseases

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29 January 2020

6

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29 January 2020

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29 January 2020

e1584

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29 January 2020

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Creative Commons Attribution 2.5 Generic

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on focus list of Wikimedia project

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Recent, independent and anthropogenic origins of Trypanosoma cruzi hybrids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Phylogenetic reconstruction based on Cytochrome b (Cytb) gene sequences reveals distinct genotypes within Colombian Trypanosoma cruzi I populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Shotgun sequencing analysis of Trypanosoma cruzi I Sylvio X10/1 and comparison with T. cruzi VI CL Brener

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Identification of the meiotic life cycle stage of Trypanosoma brucei in the tsetse fly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

The Trypanosoma cruzi Sylvio X10 strain maxicircle sequence: the third musketeer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Extraordinary Trypanosoma cruzi diversity within single mammalian reservoir hosts implies a mechanism of diversifying selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Sex, subdivision, and domestic dispersal of Trypanosoma cruzi lineage I in southern Ecuador.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Chagas cardiomyopathy manifestations and Trypanosoma cruzi genotypes circulating in chronic Chagasic patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Genetic Variability and Phylogenetic Relationships withinTrypanosoma cruziI Isolated in Colombia Based on Miniexon Gene Sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

A new consensus for Trypanosoma cruzi intraspecific nomenclature: second revision meeting recommends TcI to TcVI.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Genotyping of Trypanosoma cruzi: systematic selection of assays allowing rapid and accurate discrimination of all known lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Tablet--next generation sequence assembly visualization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

TriTrypDB: a functional genomic resource for the Trypanosomatidae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Trypanosoma cruzi IIc: phylogenetic and phylogeographic insights from sequence and microsatellite analysis and potential impact on emergent Chagas disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Chromosome level assembly of the hybrid Trypanosoma cruzi genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Genome-scale multilocus microsatellite typing of Trypanosoma cruzi discrete typing unit I reveals phylogeographic structure and specific genotypes linked to human infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Flow cytometric analysis and microsatellite genotyping reveal extensive DNA content variation in Trypanosoma cruzi populations and expose contrasts between natural and experimental hybrids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Haplotype identification within Trypanosoma cruzi I in Colombian isolates from several reservoirs, vectors and humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Molecular typing of Trypanosoma cruzi isolates, United States

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

jModelTest: phylogenetic model averaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

The use of yellow fluorescent hybrids to indicate mating in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Identifying four Trypanosoma cruzi I isolate haplotypes from different geographic regions in Colombia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Sexual reproduction and the evolution of microbial pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Ancestral genomes, sex, and the population structure of Trypanosoma cruzi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Two hybridization events define the population structure of Trypanosoma cruzi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Intragenomic spliced leader RNA array analysis of kinetoplastids reveals unexpected transcribed region diversity in Trypanosoma cruzi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Origins of Chagas disease: Didelphis species are natural hosts of Trypanosoma cruzi I and armadillos hosts of Trypanosoma cruzi II, including hybrids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

The determinants of Chagas disease: connecting parasite and host genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Mechanism of genetic exchange in American trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Microsatellite mutations in the germline: implications for evolutionary inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Genetic exchange as a possible source of genomic diversity in sylvatic populations of Trypanosoma cruzi.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Comparison of the maxicircle (mitochondrial) genomes of Leishmania tarentolae and Trypanosoma brucei at the level of nucleotide sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Genomic variation of Trypanosoma cruzi: involvement of multicopy genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 July 2018

Intraspecific Phylogeography: The Mitochondrial DNA Bridge Between Population Genetics and Systematics

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Clinical and epidemiological aspects of Chagas disease

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Predominance of lineage I among Trypanosoma cruzi isolates from Venezuelan patients with different clinical profiles of acute Chagas' disease.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Genetic clustering of Trypanosoma cruzi I lineage evidenced by intergenic miniexon gene sequencing

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Kinetoplast DNA network: evolution of an improbable structure

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Trypanosoma cruzi: new insights on ecophylogeny and hybridization by multigene sequencing of three nuclear and one maxicircle genes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Differentiation of Trypanosoma cruzi I subgroups through characterization of cytochrome b gene sequences

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Primaclade--a flexible tool to find conserved PCR primers across multiple species.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

DNA markers define two major phylogenetic lineages of Trypanosoma cruzi.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Asymmetrical division of the kinetoplast DNA network of the trypanosome.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

The Leishmania major maxicircle divergent region is variable in different isolates and cell types

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Selective amplification of maxicircle classes during the life cycle of Leishmania major.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Trypanosoma cruzi maxicircle heterogeneity in Chagas disease patients from Brazil

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Interest and limitations of Spliced Leader Intergenic Region sequences for analyzing Trypanosoma cruzi I phylogenetic diversity in the Argentinean Chaco

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Trypanosoma cruzi in Brazilian Amazonia: Lineages TCI and TCIIa in wild primates, Rhodnius spp. and in humans with Chagas disease associated with oral transmission.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Mitochondrial introgression and incomplete lineage sorting through space and time: phylogenetics of crotaphytid lizards.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Comparative phylogeography of Trypanosoma cruzi TCIIc: new hosts, association with terrestrial ecotopes, and spatial clustering.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Patterns of co-evolution between trypanosomes and their hosts deduced from ribosomal RNA and protein-coding gene phylogenies

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Trypanosoma cruzi: a considerable phylogenetic divergence indicates that the agent of Chagas disease is indigenous to the native fauna of the United States.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

The ecotopes and evolution of triatomine bugs (triatominae) and their associated trypanosomes

1 reference

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28 October 2018

Multiple guide RNAs for identical editing of Trypanosoma brucei apocytochrome b mRNA have an unusual minicircle location and are developmentally regulated

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

28 October 2018

Trypanosoma brucei: Inheritance of Kinetoplast DNA Maxicircles in a Genetic Cross and Their Segregation during Vegetative Growth

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0001584

21 January 2018

Do radically dissimilar Trypanosoma cruzi strains (zymodemes) cause Venezuelan and Brazilian forms of Chagas' disease?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323513

9 December 2018

Kinetoplast DNA minicircles are inherited from both parents in genetic crosses of Trypanosoma brucei

1 reference

https://pubmed.ncbi.nlm.nih.gov/22506081

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene trees and species trees are not the same

1 reference

https://pubmed.ncbi.nlm.nih.gov/22506081

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A theoretical study of random segregation of minicircles in trypanosomatids

1 reference

https://pubmed.ncbi.nlm.nih.gov/22506081

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PNTD.0001584

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22506081%20AND%20SRC:MED&resulttype=core&format=json

29 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22506081%20AND%20SRC:MED&resulttype=core&format=json

29 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22506081%20AND%20SRC:MED&resulttype=core&format=json

29 January 2020

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