(Q34241773)

31 July 2017

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease (English)

1 reference

inflammatory bowel diseases

31 July 2017

0 references

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1 reference

Peter J Turnbaugh

2

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Elhanan Borenstein

series ordinal

3

object named as

Elhanan Borenstein

1 reference

31 July 2017

Sharon Greenblum

1

1 reference

PubMed ID

22184244

31 July 2017

language of work or name

English

0 references

publication date

19 December 2011

1 reference

31 July 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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31 July 2017

109

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31 July 2017

2

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31 July 2017

594-599

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PubMed ID

22184244

describes a project that uses

31 July 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

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6 July 2018

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6 July 2018

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6 July 2018

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The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

6 July 2018

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The PTS transporters of Lactobacillus gasseri ATCC 33323

6 July 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

6 July 2018

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Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

6 July 2018

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Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species

6 July 2018

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The large-scale organization of the bacterial network of ecological co-occurrence interactions.

6 July 2018

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Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea

6 July 2018

1 reference

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Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways.

6 July 2018

1 reference

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6 July 2018

1 reference

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The NIH Human Microbiome Project

6 July 2018

1 reference

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Human gut microbiome adopts an alternative state following small bowel transplantation

6 July 2018

1 reference

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Metabolic-network-driven analysis of bacterial ecological strategies

6 July 2018

1 reference

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Statistical methods for detecting differentially abundant features in clinical metagenomic samples

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Identification of novel serological biomarkers for inflammatory bowel disease using Escherichia coli proteome chip

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Induced nitric oxide synthase as a major player in the oncogenic transformation of inflamed tissue

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Topological signatures of species interactions in metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Quantifying environmental adaptation of metabolic pathways in metagenomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

A core gut microbiome in obese and lean twins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Worlds within worlds: evolution of the vertebrate gut microbiota

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Large-scale reconstruction and phylogenetic analysis of metabolic environments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

The evolution of modularity in bacterial metabolic networks.

6 July 2018

1 reference

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An ecological and evolutionary perspective on human-microbe mutualism and disease

6 July 2018

1 reference

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The human microbiome project

6 July 2018

1 reference

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Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Environmental variability and modularity of bacterial metabolic networks

6 July 2018

1 reference

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Metabolic modeling of a mutualistic microbial community.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

An obesity-associated gut microbiome with increased capacity for energy harvest

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

The outcomes of pathway database computations depend on pathway ontology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Metagenomic analysis of the human distal gut microbiome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Modularity and community structure in networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Ecological and evolutionary forces shaping microbial diversity in the human intestine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

From genomics to chemical genomics: new developments in KEGG

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Comparative metagenomics of microbial communities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Functional cartography of complex metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Uncovering transcriptional regulation of metabolism by using metabolic network topology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Nitric oxide in inflammatory bowel disease: a universal messenger in an unsolved puzzle.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Metabolic network structure determines key aspects of functionality and regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

The large-scale organization of metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258644

Molecular eco-systems biology: towards an understanding of community function

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1116053109

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1116053109

Emergent cooperation in microbial metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1116053109

Computing topological parameters of biological networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1116053109

The effect of oxygen on biochemical networks and the evolution of complex life

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22184244

12 December 2020

inferred from PubMed ID database lookup

Functional essentiality from topology features in metabolic networks: a case study in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22184244

12 December 2020

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/22184244

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.1116053109

1 reference

release_nvhch3yd3fet3bfhbdgtjvvrpm

31 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/nvhch3yd3fet3bfhbdgtjvvrpm

24 November 2022

mapped directly with Wikidata item

PMCID

3258644

1 reference

31 July 2017

1 reference

PubMed ID

22184244