(Q34244212)

31 July 2017

Is EC class predictable from reaction mechanism? (English)

1 reference

31 July 2017

Neetika Nath

1

1 reference

PubMed ID

22530800

31 July 2017

John B O Mitchell

series ordinal

2

1 reference

31 July 2017

24 April 2012

1 reference

31 July 2017

1 reference

31 July 2017

13

1 reference

31 July 2017

60

1 reference

Creative Commons Attribution 2.0 Generic

31 July 2017

start time

24 April 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-60

0 references

cites work

KEGG for integration and interpretation of large-scale molecular data sets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

MACiE: exploring the diversity of biochemical reactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Toward mechanistic classification of enzyme functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Predicting phospholipidosis using machine learning

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Small Molecule Subgraph Detector (SMSD) toolkit

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Automatic assignment of EC numbers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Missing in action: enzyme functional annotations in biological databases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Towards structured output prediction of enzyme function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Evolution of enzymes and pathways for the biosynthesis of cofactors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

The geometry of interactions between catalytic residues and their substrates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Using reaction mechanism to measure enzyme similarity.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

What is a support vector machine?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Chemical Markup, XML, and the World Wide Web. 6. CMLReact, an XML Vocabulary for Chemical Reactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Gene selection and classification of microarray data using random forest.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

MACiE: a database of enzyme reaction mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

EzCatDB: the Enzyme Catalytic-mechanism Database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Predicting enzyme class from protein structure without alignments.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Understanding enzyme superfamilies. Chemistry As the fundamental determinant in the evolution of new catalytic activities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Protein function prediction via graph kernels.

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Investigations of enzyme-catalyzed reactions based on physicochemical descriptors applied to hydrolases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Assignment of EC numbers to enzymatic reactions with MOLMAP reaction descriptors and random forests.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Automatic assignment of reaction operators to enzymatic reactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

The chemistry of protein catalysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Understanding the functional roles of amino acid residues in enzyme catalysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Metal-MACiE: a database of metals involved in biological catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Metal ions in biological catalysis: from enzyme databases to general principles

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Comparing two K-category assignments by a K-category correlation coefficient.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Why are some properties more difficult to predict than others? A study of QSPR models of solubility, melting point, and Log P.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Representing structure-function relationships in mechanistically diverse enzyme superfamilies.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368749

Sequence and Structural Features of Enzymes and their Active Sites by EC Class

28 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-60

Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22530800

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-13-60

1 reference

31 July 2017

journals/bmcbi/NathM12

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1001830193

0 references

Fatcat ID

release_cgixfgryqje2fmbb2bbsmcz6fy

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/cgixfgryqje2fmbb2bbsmcz6fy

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3368749

1 reference

31 July 2017

1 reference

PubMed ID

22530800