(Q34248983)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

title

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

0 references

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Jörg Vogel

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Carsten Kröger

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Andrew Ds Cameron

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Kai Papenfort

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Karsten Hokamp

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Yanjie Chao

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Kristian Händler

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

Pimlapas Leekitcharoenphon

30 January 2020

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Amanda J Lohan

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Brendan Loftus

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

David W. Ussery

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Charles J. Dorman

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Nicholas Thomson

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Jay C. D. Hinton

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

author name string

Shane C Dillon

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Sathesh K Sivasankaran

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Alexandra Sittka

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Magali Hébrard

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Aoife Colgan

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Sacha Lucchini

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

language of work or name

English

0 references

publication date

25 April 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

30 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

volume

109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

page(s)

E1277-86

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

issue

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

Intestinal and chronic infections: Salmonella lifestyles in hostile environments

30 January 2020

cites work

1 reference

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A fundamental regulatory mechanism operating through OmpR and DNA topology controls expression of Salmonella pathogenicity islands SPI-1 and SPI-2

6 July 2018

1 reference

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Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

6 July 2018

1 reference

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Genome-wide antisense transcription drives mRNA processing in bacteria

6 July 2018

1 reference

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The transcriptional landscape of Chlamydia pneumoniae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Salmonella bongori provides insights into the evolution of the Salmonellae

6 July 2018

1 reference

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Technologies and approaches to elucidate and model the virulence program of salmonella

6 July 2018

1 reference

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Vital signs: incidence and trends of infection with pathogens transmitted commonly through food--foodborne diseases active surveillance network, 10 U.S. sites, 1996-2010.

6 July 2018

1 reference

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cis-antisense RNA, another level of gene regulation in bacteria.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

The challenge of relating gene expression to the virulence of Salmonella enterica serovar Typhimurium.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

How to become a top model: impact of animal experimentation on human Salmonella disease research.

6 July 2018

1 reference

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An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

RNA sequencing: advances, challenges and opportunities

6 July 2018

1 reference

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Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state

6 July 2018

1 reference

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Studying bacterial transcriptomes using RNA-seq

6 July 2018

1 reference

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sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes

6 July 2018

1 reference

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A 17-year review of foodborne outbreaks: describing the continuing decline in England and Wales (1992-2008).

6 July 2018

1 reference

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Regulatory RNA in bacterial pathogens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

The primary transcriptome of the major human pathogen Helicobacter pylori

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

FRT-seq: amplification-free, strand-specific transcriptome sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Invasive salmonellosis in Malawi

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Population structure, origins and evolution of major Salmonella enterica clones

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Small membrane proteins found by comparative genomics and ribosome binding site models.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

6 July 2018

1 reference

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Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

6 July 2018

1 reference

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Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Peptide-assisted degradation of the Salmonella MgtC virulence factor

6 July 2018

1 reference

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A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

During infection of epithelial cells Salmonella enterica serovar Typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Salmonellae interplay with host cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Characterization of nucleotide pools as a function of physiological state in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Anatomy of Escherichia coli sigma70 promoters.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Robust Salmonella metabolism limits possibilities for new antimicrobials.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

The global burden of typhoid fever

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Global analysis of Escherichia coli RNA degradosome function using DNA microarrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Global analysis of small RNA and mRNA targets of Hfq

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

A survey of small RNA-encoding genes in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Identification of novel small RNAs using comparative genomics and microarrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

'Intergenic' blr gene in Escherichia coli encodes a 41-residue membrane protein affecting intrinsic susceptibility to certain inhibitors of peptidoglycan synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

An altered rpoS allele contributes to the avirulence of Salmonella typhimurium LT2.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccines

6 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

6 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

The estimation of doses of Salmonella typhimurium suitable for the experimental production of disease in calves

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

The global burden of nontyphoidal Salmonella gastroenteritis.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

A global view of Escherichia coli Rsd protein and its interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

Control of rRNA expression by small molecules is dynamic and nonredundant

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

Genome sequences of Salmonella enterica serovar typhimurium, Choleraesuis, Dublin, and Gallinarum strains of well- defined virulence in food-producing animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

Regulation of Salmonella pathogenicity island 2 genes by independent environmental signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201061109

Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3356629

The KdpF subunit is part of the K(+)-translocating Kdp complex of Escherichia coli and is responsible for stabilization of the complex in vitro

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22538806

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22538806

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1201061109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22538806%20AND%20SRC:MED&resulttype=core&format=json