(Q34249487)

English

The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.

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scholarly article

1 reference

Europe PubMed Central

31 July 2017

The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA. (English)

1 reference

Europe PubMed Central

31 July 2017

1-methylpseudouridine

1 reference

ChEBI release 2020-05-28

Valérie de Crécy-Lagard

8

object named as

Valérie de Crécy-Lagard

1 reference

Europe PubMed Central

31 July 2017

5

object named as

Henri Grosjean

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Europe PubMed Central

31 July 2017

author name string

Kunal Chatterjee

1

1 reference

Europe PubMed Central

31 July 2017

Ian K Blaby

2

1 reference

Europe PubMed Central

31 July 2017

Patrick C Thiaville

3

1 reference

Europe PubMed Central

31 July 2017

Mrinmoyee Majumder

4

1 reference

Europe PubMed Central

31 July 2017

Y Adam Yuan

6

1 reference

Europe PubMed Central

31 July 2017

Ramesh Gupta

7

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Europe PubMed Central

31 July 2017

language of work or name

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publication date

24 January 2012

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Europe PubMed Central

31 July 2017

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Europe PubMed Central

31 July 2017

18

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Europe PubMed Central

31 July 2017

3

1 reference

Europe PubMed Central

31 July 2017

421-433

1 reference

Europe PubMed Central

31 July 2017

RNA nucleotide methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

Towards a systems approach in the genetic analysis of archaea: Accelerating mutant construction and phenotypic analysis in Haloferax volcanii

1 reference

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6 July 2018

Crystal structure of Mj1640/DUF358 protein reveals a putative SPOUT-class RNA methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

The RNA Modification Database, RNAMDB: 2011 update

1 reference

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Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

1 reference

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The Bowen-Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA.

1 reference

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Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea

1 reference

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6 July 2018

The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase

1 reference

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6 July 2018

Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA

1 reference

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MODOMICS: a database of RNA modification pathways. 2008 update

1 reference

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RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

1 reference

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Box C/D RNA-guided 2'-O methylations and the intron of tRNATrp are not essential for the viability of Haloferax volcanii

1 reference

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The crystal structure of Pyrococcus abyssi tRNA (uracil-54, C5)-methyltransferase provides insights into its tRNA specificity

1 reference

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Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases

1 reference

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6 July 2018

The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

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The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases

1 reference

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Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

Identification of modified residues in RNAs by reverse transcription-based methods

1 reference

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6 July 2018

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

1 reference

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6 July 2018

Genetic evidence for 18S rRNA binding and an Rps19p assembly function of yeast nucleolar protein Nep1p

1 reference

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

1 reference

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6 July 2018

A unique RNA Fold in the RumA-RNA-cofactor ternary complex contributes to substrate selectivity and enzymatic function

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

The COG database: an updated version includes eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C).

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

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6 July 2018

Multiple sequence alignment with the Clustal series of programs

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tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

1 reference

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6 July 2018

Mapping pseudouridines in RNA molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285931

6 July 2018

Deletion of the Escherichia coli pseudouridine synthase gene truB blocks formation of pseudouridine 55 in tRNA in vivo, does not affect exponential growth, but confers a strong selective disadvantage in competition with wild-type cells

1 reference

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Transfer RNA modification enzymes from Pyrococcus furiosus: detection of the enzymatic activities in vitro

1 reference

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Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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6 July 2018

Recognition of the T-arm of tRNA by tRNA (m5U54)-methyltransferase is not sequence specific

1 reference

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Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture.

1 reference

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The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles

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A novel enzymatic pathway leading to 1-methylinosine modification in Haloferax volcanii tRNA.

1 reference

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1 reference

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Sequences of halobacterial tRNAs and the paucity of U in the first position of their anticodons

1 reference

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1 reference

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1 reference

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1 reference

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Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria)

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Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer

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Differential roles of archaeal box H/ACA proteins in guide RNA-dependent and independent pseudouridine formation

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Structure of a modified nucleoside in archaebacterial tRNA which replaces ribosylthymine. 1-Methylpseudouridine

1 reference

https://pubmed.ncbi.nlm.nih.gov/22274953

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Importance of conserved residues for the conformation of the T-loop in tRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22274953

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/22274953

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping of pseudouridine residues in RNA to nucleotide resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/22274953

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Active suppressor tRNAs with a double helix between the D- and T-loops

1 reference

https://pubmed.ncbi.nlm.nih.gov/22274953

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1261/RNA.030841.111

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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