(Q34251198)

31 July 2017

title

Variable copy number, intra-genomic heterogeneities and lateral transfers of the 16S rRNA gene in Pseudomonas (English)

1 reference

31 July 2017

Josselin Bodilis

1

1 reference

31 July 2017

Sandrine Nsigue-Meilo

series ordinal

2

1 reference

31 July 2017

Ludovic Besaury

series ordinal

3

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31 July 2017

Laurent Quillet

series ordinal

4

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31 July 2017

language of work or name

English

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publication date

24 April 2012

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31 July 2017

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31 July 2017

volume

7

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31 July 2017

issue

4

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31 July 2017

page(s)

e35647

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Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

24 April 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Signalling by the fungus Pythium ultimum represses expression of two ribosomal RNA operons with key roles in the rhizosphere ecology of Pseudomonas fluorescens F113.

6 July 2018

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6 July 2018

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The causes of Pseudomonas diversity

6 July 2018

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Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

6 July 2018

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Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence

6 July 2018

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Sequence diversity of Pseudomonas aeruginosa: impact on population structure and genome evolution

6 July 2018

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Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon

6 July 2018

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Horizontal gene transfer among genomes: the complexity hypothesis

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Combined physical and genetic map of the Pseudomonas putida KT2440 chromosome

6 July 2018

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Evolutionarily conserved and functionally important residues in the I-CeuI homing endonuclease

6 July 2018

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The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes

6 July 2018

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The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera

6 July 2018

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Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences.

6 July 2018

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Salmonella typhi contains identical intervening sequences in all seven rrl genes

6 July 2018

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Compilation of small ribosomal subunit RNA structures

6 July 2018

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Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Unusual organization of the rRNA genes in Rickettsia prowazekii

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Mycobacteria possess a surprisingly small number of ribosomal RNA genes in relation to the size of their genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Genome size of Myxococcus xanthus determined by pulsed-field gel electrophoresis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Effect of growth temperature on several exported enzyme activities in the psychrotrophic bacterium Pseudomonas fluorescens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

Evaluation of the rrn operon copy number in Bifidobacterium using real-time PCR.

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

A long-branch attraction artifact reveals an adaptive radiation in pseudomonas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Phylogenetic relationships between environmental and clinical isolates of Pseudomonas fluorescens and related species deduced from 16S rRNA gene and OprF protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Real-time PCR determination of rRNA gene copy number: absolute and relative quantification assays with Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Polymorphism and gene conversion of the 16S rRNA genes in the multiple rRNA operons of Vibrio parahaemolyticus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

DNA sequence-based analysis of the Pseudomonas species

21 January 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335818

The Determination and Comparison of the 16S rRNA Gene Sequences of Species of the Genus Pseudomonas (sensu stricto and Estimation of the Natural Intrageneric Relationships

28 October 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035647

Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in bacteria and archaea

21 January 2018

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12 December 2020

Determination of 16S ribosomal RNA gene copy number in Streptococcus uberis, S. agalactiae, S. dysgalactiae and S. parauberis

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12 December 2020

Variable numbers of rRNA gene operons in Bacillus cereus strains

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12 December 2020

Persistence of rRNA operon mutated copies and rapid re-emergence of linezolid resistance in Staphylococcus aureus

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12 December 2020

Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol

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12 December 2020

10.1371/JOURNAL.PONE.0035647

Identifiers

DOI

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31 July 2017

0 references

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31 July 2017

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