(Q34252817)

31 July 2017

Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions (English)

1 reference

31 July 2017

1 reference

Jeffrey D Orth

1

1 reference

PubMed ID

22548736

31 July 2017

Bernhardø Palsson

series ordinal

2

1 reference

31 July 2017

1 May 2012

1 reference

31 July 2017

1 reference

31 July 2017

6

1 reference

31 July 2017

30

1 reference

https://scigraph.springernature.com/pub.10.1186/1752-0509-6-30

31 July 2017

0 references

cites work

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1 reference

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The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Biotin synthesis begins by hijacking the fatty acid synthetic pathway

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Systematizing the generation of missing metabolic knowledge

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

What is flux balance analysis?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Thiamin diphosphate in biological chemistry: new aspects of thiamin metabolism, especially triphosphate derivatives acting other than as cofactors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

GrowMatch: an automated method for reconciling in silico/in vivo growth predictions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

A survey of orphan enzyme activities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Global reconstruction of the human metabolic network based on genomic and bibliomic data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Systems approach to refining genome annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Experimental and computational assessment of conditionally essential genes in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Call for an enzyme genomics initiative

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Missing genes in metabolic pathways: a comparative genomics approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Genome-scale microbial in silico models: the constraints-based approach.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Purification and identification of an Escherichia coli beta-keto ester reductase as 2,5-diketo-D-gluconate reductase YqhE.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Identification of the yqhE and yafB genes encoding two 2, 5-diketo-D-gluconate reductases in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Imidazole glycerol phosphate synthase: the glutamine amidotransferase in histidine biosynthesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Purification and regulatory properties of isocitrate lyase from Escherichia coli ML308.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Metabolic modelling of microbes: the flux-balance approach

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-30

An integrative approach towards completing genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-30

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-30

A nucleosidase required for in vivo function of the S-adenosyl-L-methionine radical enzyme, biotin synthase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-30

Update on the Keio collection of Escherichia coli single-gene deletion mutants

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3423039

Kinetic studies of L-aspartase from Escherichia coli: pH-dependent activity changes

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22548736

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Does Escherichia coli possess a second citrate synthase gene?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22548736

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-6-30

1 reference

31 July 2017

journals/bmcsb/OrthP12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

31 July 2017

1 reference

PubMed ID

22548736