(Q34263130)

1 August 2017

title

Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome (English)

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1 August 2017

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Heike Wollmann

1

1 reference

1 August 2017

Sarah Holec

2

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1 August 2017

Keith Alden

3

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1 August 2017

Neil D Clarke

4

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1 August 2017

Pierre-Étienne Jacques

5

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1 August 2017

Frédéric Berger

6

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1 August 2017

publication date

3 May 2012

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1 August 2017

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1 August 2017

volume

8

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1 August 2017

issue

5

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1 August 2017

page(s)

e1002658

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Creative Commons Attribution 4.0 International

1 August 2017

copyright license

start time

3 May 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

28 July 2018

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28 July 2018

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Histone variants in metazoan development

28 July 2018

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Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres

28 July 2018

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Relationship between nucleosome positioning and DNA methylation

28 July 2018

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The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3

28 July 2018

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Down the rabbit hole of centromere assembly and dynamics

28 July 2018

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Distinct factors control histone variant H3.3 localization at specific genomic regions

28 July 2018

1 reference

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Histone variants--ancient wrap artists of the epigenome

28 July 2018

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New functions for an old variant: no substitute for histone H3.3.

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans

28 July 2018

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Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

28 July 2018

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Histone3 variants in plants.

28 July 2018

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

The Sequence Alignment/Map format and SAMtools

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

TopHat: discovering splice junctions with RNA-Seq

28 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

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Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information

28 July 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

28 July 2018

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Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana

28 July 2018

1 reference

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Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.

28 July 2018

1 reference

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Histone replacement marks the boundaries of cis-regulatory domains

28 July 2018

1 reference

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Dynamic regulation of replication independent deposition of histone H3 in fission yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Epigenetics, histone H3 variants, and the inheritance of chromatin states

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Transcriptional activation triggers deposition and removal of the histone variant H3.3.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Histone H3 variants specify modes of chromatin assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

A serine/threonine protein kinase gene isolated by an in vivo binding procedure using the Arabidopsis floral homeotic gene product, AGAMOUS.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Polyadenylated H3 histone transcripts and H3 histone variants in alfalfa

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

A plant histone gene promoter can direct both replication-dependent and -independent gene expression in transgenic plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Genes encoding a histone H3.3-like variant in Arabidopsis contain intervening sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Genome-scale profiling of histone H3.3 replacement patterns.

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Histone H3.3 deposition at E2F-regulated genes is linked to transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Inducible deposition of the histone variant H3.3 in interferon-stimulated genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Identification of three highly expressed replacement histone H3 genes of alfalfa

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Multiplicity of histone h3 variants in wheat, barley, rice, and maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Phylogenomics of the nucleosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Histone H3 variants in male gametic cells of lily and H3 methylation in mature pollen

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002658

Evolution of histone H3: emergence of variants and conservation of post-translational modification sites.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3342937

Profiling histone modification patterns in plants using genomic tiling microarrays

28 October 2018

1 reference

12 December 2020

Cell cycling and cell enlargement in developing leaves of Arabidopsis

1 reference

12 December 2020

A gateway cloning vector set for high-throughput functional analysis of genes in planta

1 reference

12 December 2020

Common features of analogous replacement histone H3 genes in animals and plants

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1002658

Identifiers

DOI

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1 August 2017

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1 August 2017

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