(Q34304215)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25228471%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis (English)

1 reference

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16 February 2020

2

1 reference

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16 February 2020

Qian-Hao Zhu

6

1 reference

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16 February 2020

Danny J Llewellyn

9

1 reference

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16 February 2020

11

Elizabeth S Dennis

1 reference

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16 February 2020

5

Phil Chi Khang Au

1 reference

16 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25228471%20AND%20SRC:MED&resulttype=core&format=json

Tuan-Ngoc Le

1

1 reference

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16 February 2020

Neil A Smith

3

1 reference

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16 February 2020

Sameer Tiwari

4

1 reference

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16 February 2020

Jennifer M Taylor

7

1 reference

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16 February 2020

Kemal Kazan

8

1 reference

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16 February 2020

Ren Zhang

10

1 reference

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16 February 2020

Ming-Bo Wang

12

1 reference

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16 February 2020

publication date

17 September 2014

1 reference

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16 February 2020

1 reference

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16 February 2020

volume

15

1 reference

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16 February 2020

issue

9

1 reference

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16 February 2020

page(s)

458

1 reference

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Creative Commons Attribution 4.0 International

16 February 2020

copyright license

start time

1 September 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

LIMMA

2 references

22 June 2022

https://europepmc.org/article/PMC/4189188

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

1 reference

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Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

6 July 2018

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Spreading of heterochromatin is limited to specific families of maize retrotransposons

6 July 2018

1 reference

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CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

6 July 2018

1 reference

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Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Widespread dynamic DNA methylation in response to biotic stress

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

The RNA silencing enzyme RNA polymerase v is required for plant immunity

6 July 2018

1 reference

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Genome demethylation and imprinting in the endosperm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Methylation and demethylation of the Arabidopsis genome

6 July 2018

1 reference

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agriGO: a GO analysis toolkit for the agricultural community

6 July 2018

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Galaxy: a web-based genome analysis tool for experimentalists

6 July 2018

1 reference

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Active DNA demethylation mediated by DNA glycosylases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Genome-wide demethylation of Arabidopsis endosperm.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

RNA silencing is required for Arabidopsis defence against Verticillium wilt disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Epigenetic inheritance in rice plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

DNA demethylation in the Arabidopsis genome.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

A novel gene family induced by acute inflammation in endothelial cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

6 July 2018

1 reference

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

6 July 2018

1 reference

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Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1

6 July 2018

1 reference

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Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Transgene expression and transgene-induced silencing in diploid and autotetraploid Arabidopsis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

VirtualPlant: a software platform to support systems biology research.

28 October 2018

1 reference

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Plant MetGenMAP: an integrative analysis system for plant systems biology

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

Hairpin RNAs derived from RNA polymerase II and polymerase III promoter-directed transgenes are processed differently in plants.

28 October 2018

1 reference

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ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4189188

ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase

28 October 2018

1 reference

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Abiotic-stress induces demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants

28 October 2018

1 reference

12 December 2020

Identification of RNA-dependent DNA-methylation regulated promoters in Arabidopsis

1 reference

12 December 2020

Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq

1 reference

12 December 2020

Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochromatin upon attack by pseudomonas syringae

1 reference

12 December 2020

RNA-directed DNA methylation

1 reference

12 December 2020

10.1186/PREACCEPT-1557064081219548

Identifiers

DOI

1 reference

PubMed publication ID

25228471

10.1186/S13059-014-0458-3

1 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25228471%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25228471%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

25228471

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25228471%20AND%20SRC:MED&resulttype=core&format=json