(Q34304533)

1 August 2017

title

Distant activation of transcription: mechanisms of enhancer action (English)

1 reference

1 August 2017

Olga I Kulaeva

1

1 reference

1 August 2017

Ekaterina V Nizovtseva

2

1 reference

1 August 2017

Yury S Polikanov

3

1 reference

1 August 2017

Sergei V Ulianov

4

1 reference

1 August 2017

Vasily M Studitsky

5

1 reference

1 August 2017

language of work or name

English

0 references

publication date

8 October 2012

1 reference

Molecular and Cellular Biology

1 August 2017

published in

1 reference

1 August 2017

volume

32

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1 August 2017

issue

24

1 reference

1 August 2017

page(s)

4892-4897

1 reference

The long-range interaction landscape of gene promoters

1 August 2017

cites work

1 reference

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6 July 2018

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6 July 2018

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Epigenomic enhancer profiling defines a signature of colon cancer

6 July 2018

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6 July 2018

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6 July 2018

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

6 July 2018

1 reference

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Insulators, long-range interactions, and genome function

6 July 2018

1 reference

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Transcriptional regulation by Pol II(G) involving mediator and competitive interactions of Gdown1 and TFIIF with Pol II.

6 July 2018

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Functional association of Gdown1 with RNA polymerase II poised on human genes

6 July 2018

1 reference

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Enhancer and promoter interactions-long distance calls

6 July 2018

1 reference

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Polycomb-repressed genes have permissive enhancers that initiate reprogramming

6 July 2018

1 reference

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Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators

6 July 2018

1 reference

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Distant cis-regulatory elements in human skeletal muscle differentiation.

6 July 2018

1 reference

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Evidence that gene activation and silencing during stem cell differentiation requires a transcriptionally paused intermediate state

6 July 2018

1 reference

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Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Enhancer function: new insights into the regulation of tissue-specific gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

A unique chromatin signature uncovers early developmental enhancers in humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Analysis of active and inactive X chromosome architecture reveals the independent organization of 30 nm and large-scale chromatin structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Long noncoding RNAs with enhancer-like function in human cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Mediator and cohesin connect gene expression and chromatin architecture

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Widespread transcription at neuronal activity-regulated enhancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Genomic views of distant-acting enhancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Spontaneous access to DNA target sites in folded chromatin fibers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Ectopic nuclear reorganisation driven by a Hoxb1 transgene transposed into Hoxd

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

A facilitated tracking and transcription mechanism of long-range enhancer function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Probability of the site juxtaposition determines the rate of protein-mediated DNA looping

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Nuclear organization of the genome and the potential for gene regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Higher-order structures of chromatin: the elusive 30 nm fiber

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Chromatin structure can strongly facilitate enhancer action over a distance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Inducible DNA-loop formation blocks transcriptional activation by an SV40 enhancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Rapid spontaneous accessibility of nucleosomal DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Rationally designed insulator-like elements can block enhancer action in vitro

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Communication over a large distance: enhancers and insulators

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Circle ligation of in vitro assembled chromatin indicates a highly flexible structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Insulators: many functions, many mechanisms.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Action of prokaryotic enhancer over a distance does not require continued presence of promoter-bound sigma54 subunit

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

DNA supercoiling allows enhancer action over a large distance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Dynamics of site juxtaposition in supercoiled DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

HMG I/Y regulates long-range enhancer-dependent transcription on DNA and chromatin by changes in DNA topology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Quantitative comparison of DNA looping in vitro and in vivo: chromatin increases effective DNA flexibility at short distances

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Biochemistry and structural biology of transcription factor IID (TFIID)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Effect of supercoiling on the juxtaposition and relative orientation of DNA sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Gene regulation by proteins acting nearby and at a distance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Threshold phenomena and long-distance activation of transcription by RNA polymerase II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

HS2 enhancer function is blocked by a transcriptional terminator inserted between the enhancer and the promoter

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510544

Genome architecture and expression

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23045397

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23045397

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/MCB.01127-12

1 reference

1 August 2017

1 reference

1 August 2017

1 reference