(Q34307655)

1 August 2017

Genotype of a historic strain of Mycobacterium tuberculosis (English)

1 reference

Mycobacterium tuberculosis

1 August 2017

0 references

5

Malin Holst

1 reference

1 August 2017

7

Charlotte A Roberts

1 reference

1 August 2017

Abigail S Bouwman

1

1 reference

1 August 2017

Sandra L Kennedy

2

1 reference

1 August 2017

Romy Müller

3

1 reference

1 August 2017

Richard H Stephens

4

1 reference

1 August 2017

Anwen C Caffell

6

1 reference

1 August 2017

Terence A Brown

8

1 reference

1 August 2017

language of work or name

English

0 references

publication date

22 October 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

1 August 2017

109

1 reference

1 August 2017

45

1 reference

1 August 2017

18511-18516

1 reference

Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives

1 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

A draft genome of Yersinia pestis from victims of the Black Death

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

A rapid column-based ancient DNA extraction method for increased sample throughput

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Variation among genome sequences of H37Rv strains of Mycobacterium tuberculosis from multiple laboratories

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Drivers of tuberculosis epidemics: the role of risk factors and social determinants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Antibiotic resistance and single-nucleotide polymorphism cluster grouping type in a multinational sample of resistant Mycobacterium tuberculosis isolates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Detecting emerging strains of tuberculosis by using spoligotypes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Assessing ancient DNA studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Comment. Pathogenic microbial ancient DNA: a problem or an opportunity?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Variable host-pathogen compatibility in Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP se

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Genotypic analysis of the earliest known prehistoric case of tuberculosis in Britain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

The origin and evolution of Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Detection of mycobacterial DNA in Andean mummies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

A new evolutionary scenario for the Mycobacterium tuberculosis complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Ancient DNA: do it right or not at all

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

A greedy algorithm for aligning DNA sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Genotypic analysis of Mycobacterium tuberculosis from medieval human remains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Specific detection of Mycobacterium tuberculosis by mtp40 nested PCR.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

The mtp40 gene is not present in all strains of Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Assessment of genetic markers for species differentiation within the Mycobacterium tuberculosis complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Identification of Mycobacterium tuberculosis DNA in a pre-Columbian Peruvian mummy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Inflammatory lesions of ribs: an analysis of the Terry Collection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Identification of an insertion sequence, IS1081, in Mycobacterium bovis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494915

Letter to the editor: was tuberculosis present in Homo erectus in Turkey?

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

First report of Mycobacterium bovis DNA in human remains from the Iron Age.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

Molecular analysis of Mycobacterium tuberculosis DNA from a family of 18th century Hungarians.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

The mtp40 gene is not present in Mycobacterium bovis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

Brief communication: identification of the authentic ancient DNA sequence in a human bone contaminated with modern DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

The limits of biomolecular palaeopathology: ancient DNA cannot be used to study venereal syphilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

Ancient DNA extraction from bones and teeth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1209444109

WHO declares tuberculosis a global emergency

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23091009

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1209444109

1 reference

1 August 2017

0 references

1 reference

1 August 2017

1 reference