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MAVID: constrained ancestral alignment of multiple sequences
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
title
MAVID: constrained ancestral alignment of multiple sequences
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
author
Lior Pachter
series ordinal
2
object named as
Lior Pachter
0 references
author name string
Nicolas Bray
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
publication date
1 April 2004
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
published in
Genome Research
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
volume
14
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
page(s)
693-699
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
issue
4
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
cites work
Visualization of multiple genome annotations and alignments with the K-BROWSER.
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PubMed Central
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Identification of evolutionary hotspots in the rodent genomes
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6 July 2018
Comparative analyses of multi-species sequences from targeted genomic regions
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6 July 2018
MAVID multiple alignment server
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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6 July 2018
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
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Phylogenetic shadowing of primate sequences to find functional regions of the human genome
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6 July 2018
AVID: A global alignment program
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PubMed Central
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6 July 2018
Recent progress in multiple sequence alignment: a survey
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PubMed Central
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6 July 2018
Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups
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PubMed Central
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6 July 2018
BLAT—The BLAST-Like Alignment Tool
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PubMed Central
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6 July 2018
Evolutionary HMMs: a Bayesian approach to multiple alignment
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PubMed Central
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6 July 2018
Prediction of complete gene structures in human genomic DNA
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6 July 2018
Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
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PubMed Central
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6 July 2018
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.
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6 July 2018
Positive and negative regulatory elements of the rabbit embryonic epsilon-globin gene revealed by an improved multiple alignment program and functional analysis.
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6 July 2018
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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6 July 2018
Evolutionary trees from DNA sequences: A maximum likelihood approach
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6 July 2018
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
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An evolutionary model for maximum likelihood alignment of DNA sequences
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6 July 2018
Inching toward reality: an improved likelihood model of sequence evolution
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6 July 2018
A structural EM algorithm for phylogenetic inference.
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28 October 2018
An algorithm for statistical alignment of sequences related by a binary tree.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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28 October 2018
Statistical alignment: computational properties, homology testing and goodness-of-fit.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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28 October 2018
The number of multiple alignments
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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28 October 2018
DIALIGN: finding local similarities by multiple sequence alignment.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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28 October 2018
Optimal alignment between groups of sequences and its application to multiple sequence alignment.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=383315
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28 October 2018
Using guide trees to construct multiple-sequence evolutionary HMMs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15060012
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A hidden Markov model for progressive multiple alignment
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15060012
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/GR.1960404
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
arXiv ID
q-bio/0311018
1 reference
stated in
Unpaywall
PMCID
383315
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
PubMed ID
15060012
1 reference
stated in
Europe PubMed Central
PubMed ID
15060012
retrieved
1 August 2017
ResearchGate publication ID
8641411
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