(Q34322512)

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TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data

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scholarly article

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Europe PubMed Central

PubMed publication ID

1 August 2017

TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

0 references

Timothy K Starr

1 reference

ORCID Public Data File 2021

Aaron L. Sarver

1

object named as

Aaron L Sarver

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

David A Largaespada

4

object named as

David A Largaespada

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Kevin A. T. Silverstein

5

object named as

Kevin A T Silverstein

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

author name string

Jesse Erdman

2

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Tim Starr

3

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

publication date

29 June 2012

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Europe PubMed Central

PubMed publication ID

1 August 2017

BMC Bioinformatics

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Europe PubMed Central

PubMed publication ID

1 August 2017

13

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

154

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

copyright license

Creative Commons Attribution 2.0 Generic

29 June 2012

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April 2022 Public Data File from Crossref

copyright status

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April 2022 Public Data File from Crossref

describes a project that uses

1 reference

Europe PubMed Central

26 June 2022

https://europepmc.org/article/PMC/PMC3461456

based on heuristic

inferred from PubMed Central ID database lookup

The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Integrative genomics viewer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

A transposon-based genetic screen in mice identifies genes altered in colorectal cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

A conditional transposon-based insertional mutagenesis screen for genes associated with mouse hepatocellular carcinoma.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Transposon-mediated mutagenesis in somatic cells: identification of transposon-genomic DNA junctions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Retroviral insertional mutagenesis: past, present and future

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

RTCGD: retroviral tagged cancer gene database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

The UCSC Genome Browser Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

The art and design of genetic screens: Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461456

6 July 2018

Chromosomal mobilization and reintegration of Sleeping Beauty and PiggyBac transposons.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-154

21 January 2018

Identifiers

10.1186/1471-2105-13-154

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

DBLP publication ID

journals/bmcbi/SarverESLS12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

0 references

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