(Q34324226)

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The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

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scholarly article

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Europe PubMed Central

1 August 2017

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza (English)

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Europe PubMed Central

1 August 2017

27

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1 August 2017

object named as

Wenming Wang

4

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David J. Mackill

object named as

David MacKill

14

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Phillip J SanMiguel

24

object named as

Phillip SanMiguel

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Europe PubMed Central

1 August 2017

Nicholas B. Sisneros

9

object named as

Nicholas B Sisneros

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2

object named as

Meizhong Luo

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1 August 2017

Carol Soderlund

25

object named as

Carol Soderlund

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20

object named as

Kiran Rao

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7

object named as

Jayson Talag

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Europe PubMed Central

1 August 2017

21

object named as

Jason G Walling

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Europe PubMed Central

1 August 2017

22

object named as

Navdeep Gill

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1 August 2017

author name string

Jetty S S Ammiraju

1

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1 August 2017

José L Goicoechea

3

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1 August 2017

Dave Kudrna

5

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1 August 2017

Christopher Mueller

6

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1 August 2017

HyeRan Kim

8

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Barbara Blackmon

10

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1 August 2017

Eric Fang

11

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1 August 2017

Jeffery B Tomkins

12

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1 August 2017

Darshan Brar

13

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1 August 2017

Susan McCouch

15

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1 August 2017

Nori Kurata

16

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1 August 2017

Georgina Lambert

17

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1 August 2017

David W Galbraith

18

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1 August 2017

K Arumuganathan

19

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1 August 2017

Yeisoo Yu

23

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Scott Jackson

26

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1 August 2017

publication date

12 December 2005

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1 August 2017

Genome Research

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1 August 2017

16

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1

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1 August 2017

140-147

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Europe PubMed Central

1 August 2017

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

The map-based sequence of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Sequence composition and genome organization of maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Rapid recent growth and divergence of rice nuclear genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

An Improved Method for Plant BAC Library Construction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Construction and characterization of a half million clone BAC library of durum wheat ( Triticum turgidum ssp. durum).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Genome-wide intraspecific DNA-sequence variations in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Construction of a BAC library and its application to the identification of simple sequence repeats in peach [ Prunus persica (L.) Batsch].

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

An integrated physical and genetic map of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

The colinearity of the Sh2/A1 orthologous region in rice, sorghum and maize is interrupted and accompanied by genome expansion in the triticeae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Contigs built with fingerprints, markers, and FPC V4.7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Alien introgression in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Origin, dispersal, cultivation and variation of rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

Rapid flow cytometric analysis of the cell cycle in intact plant tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

Comparative genetics at the gene and chromosome levels between rice ( Oryza sativa) and wildrice ( Zizania palustris).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

Sequence and analysis of rice chromosome 4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

DNA sequence quality trimming and vector removal.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

Sources and predictors of resolvable indel polymorphism assessed using rice as a model

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-specific repetitive sequences in the genus Oryza

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative RFLP mapping of an allotetraploid wild rice species (Oryza latifolia) and cultivated rice (O. sativa)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.3766306

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Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

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Europe PubMed Central

1 August 2017

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