(Q34330345)

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Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

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scholarly article

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Europe PubMed Central

1 August 2017

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)). (English)

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Europe PubMed Central

1 August 2017

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whole genome sequencing

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based on heuristic

inferred from title

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based on heuristic

inferred from title

Scott A. Beatson

3

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Europe PubMed Central

1 August 2017

21

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Europe PubMed Central

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Nikos C. Kyrpides

23

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24

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Natalia N. Ivanova

25

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5

object named as

Alla Lapidus

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Hans-Peter Klenk

26

object named as

Hans-Peter Klenk

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Tijana Glavina Del Rio

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object named as

Tijana Glavina Del Rio

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17

object named as

Roxanne Tapia

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27

object named as

Tanja Woyke

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Ulrike Kappler

1

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12

object named as

Sam Pitluck

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Europe PubMed Central

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14

object named as

David Bruce

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Europe PubMed Central

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16

object named as

Cliff Han

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Europe PubMed Central

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22

object named as

Loren Hauser

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Europe PubMed Central

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4

object named as

Susan Lucas

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Europe PubMed Central

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Cynthia D Jeffries

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object named as

Cynthia D Jeffries

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Europe PubMed Central

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11

object named as

Hope Tice

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Europe PubMed Central

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18

object named as

John C Detter

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Europe PubMed Central

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object named as

Alex Copeland

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Europe PubMed Central

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Karen W Davenport

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object named as

Karen Davenport

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Europe PubMed Central

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9

object named as

Nancy Hammon

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Europe PubMed Central

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Kerrie W. Berry

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object named as

Kerrie W Berry

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Europe PubMed Central

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19

object named as

Yun-Juan Chang

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Europe PubMed Central

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10

object named as

Eileen Dalin

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Europe PubMed Central

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Lynne A. Goodwin

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object named as

Lynne A Goodwin

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author name string

Paul Richardson

13

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Europe PubMed Central

1 August 2017

publication date

26 September 2012

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Europe PubMed Central

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Standards in genomic sciences

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7

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1

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44-58

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Europe PubMed Central

1 August 2017

https://scigraph.springernature.com/pub.10.4056/sigs.3006378

0 references

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

1 reference

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The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

1 reference

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Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

1 reference

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Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

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Molecular Basis for Enzymatic Sulfite Oxidation: HOW THREE CONSERVED ACTIVE SITE RESIDUES SHAPE ENZYME ACTIVITY

1 reference

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A rapid bootstrap algorithm for the RAxML Web servers

1 reference

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The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571

1 reference

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The minimum information about a genome sequence (MIGS) specification

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa

1 reference

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Starkeya koreensis sp. nov., isolated from rice straw

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Kinetic and structural evidence for the importance of Tyr236 for the integrity of the Mo active site in a bacterial sulfite dehydrogenase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Thiosulfate Oxidation and Electron Transport in Thiobacillus novellus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Cultivation of Organisms Concerned in the Oxidation of Thiosulfate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov

1 reference

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Improved prediction of signal peptides: SignalP 3.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Thiobacillus novellus. I. Growth on organic and inorganic media

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Rfam: an RNA family database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Multiple sequence alignment using partial order graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Sulfite:Cytochrome c oxidoreductase from Thiobacillus novellus. Purification, characterization, and molecular biology of a heterodimeric member of the sulfite oxidase family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

2 references

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https://api.crossref.org/works/10.4056%2FSIGS.3006378

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Regulation of glucose transport and metabolism in Thiobacillus novellus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

6 July 2018

Sulfite oxidase activity in Thiobacillus novellus

1 reference

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Catabolite Repression in the Facultative Chemoautotroph Thiobacillus novellus

1 reference

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New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus

1 reference

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Isolation and characterization of a bacteriophage for Thiobacillus novellus

1 reference

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Basic local alignment search tool

1 reference

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Subunits of Cytochrome a-Type Terminal Oxidases Derived from Thiobacillus novellus and Nitrobacter agilis1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3570799

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Thiobacillus novelluscytochrome oxidase can separate some eucaryotic cytochromesc

1 reference

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Approved Lists of Bacterial Names

1 reference

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Carbon dioxide fixation and carboxydismutase in Thiobacillusnovellus

1 reference

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Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellus).

1 reference

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Molecular basis of intramolecular electron transfer in sulfite-oxidizing enzymes is revealed by high resolution structure of a heterodimeric complex of the catalytic molybdopterin subunit and a c-type cytochrome subunit

1 reference

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List of new names and new combinations previously effectively, but not validly, published

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.3006378

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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

1 reference

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COPYCAT : cophylogenetic analysis tool

1 reference

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21 January 2018

Purification of Thiobacillus novellus sulfite oxidase. Evidence for the presence of heme and molybdenum

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

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A comparative survey of several bacterial aa3-type cytochrome c oxidases

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

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based on heuristic

inferred from PubMed ID database lookup

The formation of sulphite during the oxidation of thiosulphate by Thiobacillus novellus

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

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based on heuristic

inferred from PubMed ID database lookup

Thiobacillus novellus Cytochrome c Oxidase Contains One Heme a Molecule and One Copper Atom per Catalytic Unit

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytochrome a-type terminal oxidase derived from Thiobacillus novellus. Molecular and enzymatic properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short circuiting a sulfite oxidising enzyme with direct electrochemistry: active site substitutions and their effect on catalysis and electron transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

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based on heuristic

inferred from PubMed ID database lookup

Direct electrochemistry of a bacterial sulfite dehydrogenase

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

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based on heuristic

inferred from PubMed ID database lookup

The effects of several nucleotides on the molecular state and catalytic activity of Thiobacillus novellus cytochrome c oxidase. ATP affects the oxidase uniquely

1 reference

https://pubmed.ncbi.nlm.nih.gov/23450099

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.4056/SIGS.3006378

1 reference

Europe PubMed Central

1 August 2017

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PMC publication ID

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Europe PubMed Central

1 August 2017

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Europe PubMed Central

1 August 2017

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