(Q34341366)

1 August 2017

title

Modeling compositional dynamics based on GC and purine contents of protein-coding sequences (English)

1 reference

1 August 2017

Zhang Zhang

1

1 reference

1 August 2017

Jun Yu

series ordinal

2

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1 August 2017

publication date

8 November 2010

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1 August 2017

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1 August 2017

volume

5

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1 August 2017

page(s)

63

1 reference

https://scigraph.springernature.com/pub.10.1186/1745-6150-5-63

1 August 2017

exact match

0 references

cites work

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6 July 2018

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Codon usage in twelve species of Drosophila

6 July 2018

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6 July 2018

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Variation in evolutionary processes at different codon positions

6 July 2018

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Synonymous codon usage in Escherichia coli: selection for translational accuracy.

6 July 2018

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Environments shape the nucleotide composition of genomes

6 July 2018

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A mechanism for the association of amino acids with their codons and the origin of the genetic code

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Asymmetric directional mutation pressures in bacteria

6 July 2018

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Synonymous codon usage in bacteria

6 July 2018

1 reference

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Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

6 July 2018

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Isochore chromosome maps of eukaryotic genomes

6 July 2018

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6 July 2018

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6 July 2018

1 reference

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Assessment of compositional heterogeneity within and between eukaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Isochores and the evolutionary genomics of vertebrates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage tabulated from international DNA sequence databases: status for the year 2000

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon bias evolution in Drosophila. Population genetics of mutation-selection drift

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage bias and tRNA abundance in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Compositional differences within and between eukaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Compositional biases of bacterial genomes and evolutionary implications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Maximizing transcription efficiency causes codon usage bias

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage bias and base composition of nuclear genes in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Mammalian gene evolution: nucleotide sequence divergence between mouse and rat

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Dinucleotide relative abundance extremes: a genomic signature

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

6 July 2018

Codon selection in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage in bacteria: correlation with gene expressivity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage and tRNA content in unicellular and multicellular organisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

The guanine and cytosine content of genomic DNA and bacterial evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Directional mutation pressure and neutral molecular evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Compositional patterns in vertebrate genomes: conservation and change in evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Compositional constraints and genome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage in plant genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

The selection-mutation-drift theory of synonymous codon usage

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

A universal compositional correlation among codon positions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Nucleotide substitution bias within the genus Drosophila affects the pattern of proteome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

GC content variability of eubacteria is governed by the pol III alpha subunit

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage bias and mutation constraints reduce the level of error minimization of the genetic code.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

A universal evolutionary index for amino acid changes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Correlations between nucleotide frequencies and amino acid composition in 115 bacterial species.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon usage decreases the error minimization within the genetic code.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Mutational bias affects protein evolution in flowering plants

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Comparative DNA analysis across diverse genomes.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Distinguishing the effects of mutational biases and natural selection on DNA sequence variation.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

A model for the correlation of mutation rate with GC content and the origin of GC-rich isochores.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989939

Codon evolution is governed by linear formulas

27 October 2018

1 reference

12 December 2020

Compositional correlation studies among the three different codon positions in 12 bacterial genomes

1 reference

12 December 2020

Compositional dynamics of guanine and cytosine content in prokaryotic genomes

1 reference

12 December 2020

Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

1 reference

12 December 2020

Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage

1 reference

12 December 2020

Compositional correlation between deoxyribonucleic acid and protein

1 reference

12 December 2020

Selection on codon usage for error minimization at the protein level

1 reference

12 December 2020

Identifiers

DOI

10.1186/1745-6150-5-63

1 reference

Dimensions Publication ID

1 August 2017

0 references

1 reference

1 August 2017

1 reference