(Q42088300)

16 October 2017

Nucleotide substitution bias within the genus Drosophila affects the pattern of proteome evolution (English)

1 reference

16 October 2017

0 references

1 reference

Drosophila

1 reference

Mihai Albu

1

1 reference

16 October 2017

Xiang Jia Min

series ordinal

2

1 reference

16 October 2017

G Brian Golding

series ordinal

3

1 reference

16 October 2017

Donal Hickey

series ordinal

4

1 reference

16 October 2017

4 August 2009

1 reference

Genome Biology and Evolution

16 October 2017

1 reference

16 October 2017

1

1 reference

16 October 2017

288-293

1 reference

Recovering evolutionary trees under a more realistic model of sequence evolution

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Drosophila Genomes by the Baker's Dozen. Preface

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Codon usage in twelve species of Drosophila

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Evolution of genes and genomes on the Drosophila phylogeny

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Gene conversion drives GC content evolution in mammalian histones

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Base compositional bias and phylogenetic analyses: a test of the "flying DNA" hypothesis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

29 May 2018

Non-Darwinian Evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Concerted evolution of duplicated protein-coding genes in Drosophila

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Directional mutation pressure, selective constraints, and genetic equilibria

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Testing congruence in phylogenomic analysis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Mutational bias affects protein evolution in flowering plants

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

The evolution of genomic base composition in bacteria

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817423

Ribosomal RNA trees misleading?

17 August 2018

1 reference

12 December 2020

Influence of genomic G+C content on average amino-acid composition of proteins from 59 bacterial species

1 reference

12 December 2020

The response of amino acid frequencies to directional mutation pressure in mitochondrial genome sequences is related to the physical properties of the amino acids and to the structure of the genetic code

1 reference

12 December 2020

Some aspects of protein evolution

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVP028

1 reference

release_3vamw2eu25e43nzbkv4d6wir5a

16 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3vamw2eu25e43nzbkv4d6wir5a

24 November 2022

mapped directly with Wikidata item

1 reference

16 October 2017

PubMed publication ID

20333198

1 reference