(Q34342205)

English

Assessing whether alpha-tubulin sequences are suitable for phylogenetic reconstruction of Ciliophora with insights into its evolution in euplotids

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Assessing whether alpha-tubulin sequences are suitable for phylogenetic reconstruction of Ciliophora with insights into its evolution in euplotids (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

1 reference

based on heuristic

inferred from title

object named as

euplotids

1 reference

based on heuristic

inferred from title

3

object named as

Weibo Song

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

2

object named as

Laura A Katz

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

author name string

Zhenzhen Yi

1

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

language of work or name

0 references

publication date

10 July 2012

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

7

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

7

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

e40635

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

copyright license

Creative Commons Attribution 4.0 International

10 July 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Evolution of discocephalid ciliates: molecular, morphological and ontogenetic data support a sister group of discocephalids and pseudoamphisiellids (Protozoa, Ciliophora) with establishment of a new suborder Pseudoamphisiellina subord. n.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

The morphology, ontogeny, and small subunit rRNA gene sequence analysis of Diophrys parappendiculata n. sp. (Protozoa, Ciliophora, Euplotida), a new marine ciliate from coastal waters of southern China

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Evolution of the order Urostylida (Protozoa, Ciliophora): new hypotheses based on multi-gene information and identification of localized incongruence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Morphology, Ontogenesis and Molecular Phylogeny of Neokeronopsis (Afrokeronopsis) aurea nov. subgen., nov. spec. (Ciliophora: Hypotricha), a New African Flagship Ciliate Confirms the CEUU Hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Two new Diophrys-like genera and their type species, Apodiophrys ovalis n. g., n. sp. and Heterodiophrys zhui n. g., n. sp. (Ciliophora: Euplotida), with notes on their molecular phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Alpha-tubulin and small subunit rRNA phylogenies of peritrichs are congruent and do not support the clustering of mobilids and sessilids (Ciliophora, Oligohymenophorea).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Two new marine ciliates, Euplotes sinicus sp. nov. and Euplotes parabalteatus sp. nov., and a new small subunit rRNA gene sequence of Euplotes rariseta (Ciliophora, Spirotrichea, Euplotida).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Reconsideration of systematic relationships within the order Euplotida (Protista, Ciliophora) using new sequences of the gene coding for small-subunit rRNA and testing the use of combined data sets to construct phylogenies of the Diophrys-complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Morphology and molecular phylogeny of Trimyema koreanum n. sp., a ciliate from the hypersaline water of a solar saltern

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Broadly sampled multigene trees of eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU-rDNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Small-subunit rRNA Phylogenies Suggest That Epalxella antiquorum (penard, 1922) corliss, 1960 (ciliophora, odontostomatida) is a member of the plagyopylea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

A unique euplotid ciliate, Gastrocirrhus (Protozoa, Ciliophora): assessment of its phylogenetic position inferred from the small subunit rRNA gene sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Redescriptions of two marine hypotrichous ciliates, Diophrys irmgard and D. hystrix (Ciliophora, Euplotida), with a brief revision of the genus Diophrys

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Micronuclear and macronuclear forms of beta-tubulin genes in the ciliate Chilodonella uncinata reveal insights into genome processing and protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Phylogeny of the Stichotrichia (Ciliophora; Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

ProtTest: selection of best-fit models of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Evolution of duplicated alpha-tubulin genes in ciliates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

An approximately unbiased test of phylogenetic tree selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

CONSEL: for assessing the confidence of phylogenetic tree selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Phylogenetic relationships among hypotrichous ciliates determined with the macronuclear gene encoding the large, catalytic subunit of DNA polymerase alpha

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

TreeView: an application to display phylogenetic trees on personal computers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Small subunit ribosomal RNA+ of Hexamita inflata and the quest for the first branch in the eukaryotic tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Inferring phylogenies from DNA sequences of unequal base compositions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Distinguishing Homologous from Analogous Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

6 July 2018

Molecular phylogeny of litostome ciliates (Ciliophora, Litostomatea) with emphasis on free-living haptorian genera

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Increasing taxon sampling using both unidentified environmental sequences and identified cultures improves phylogenetic inference in the Prorodontida (Ciliophora, Prostomatea).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Does Kiitricha (Protista, Ciliophora, Spirotrichea) belong to Euplotida or represent a primordial spirotrichous taxon? With suggestion to establish a new subclass Protohypotrichia.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Protocruzia, a highly ambiguous ciliate (Protozoa; Ciliophora): very likely an ancestral form for Heterotrichea, Colpodea or Spirotrichea? With reevaluation of its evolutionary position based on multigene analyses.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

New insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Analysis of the internal transcribed spacer 2 (ITS2) region of scuticociliates and related taxa (Ciliophora, Oligohymenophorea) to infer their evolution and phylogeny.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Phylogenetic relationships among 28 spirotrichous ciliates documented by rDNA.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

The scrambled actin I gene in Uroleptus pisces.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Protein coding gene trees in ciliates: comparison with rRNA-based phylogenies.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Analysis of the secondary structure of ITS transcripts in peritrich ciliates (Ciliophora, Oligohymenophorea): implications for structural evolution and phylogenetic reconstruction

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Taxonomy and phylogenetic relationship of eight species of the genus Euplotes (hypotrichida, ciliophora) as revealed by enzyme electrophoresis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Phylogenetic relationships within the class Spirotrichea (Ciliophora) inferred from small subunit rRNA gene sequences.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Morphology and SSU rRNA gene-based phylogeny of two marine Euplotes species, E. orientalis spec. nov. and E. raikovi (Ciliophora, Euplotida).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Morphology, ultrastructure, molecular phylogeny, and autecology of Euplotes elegans Kahl, 1932 (Hypotrichida; Euplotidae) isolated from the anoxic Mariager Fjord, Denmark.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

A molecular approach to the tangled intrageneric relationships underlying phylogeny in Euplotes (Ciliophora, Spirotrichea).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Phylogenetic position of Licnophora, Lechriopyla, and Schizocaryum, three unusual ciliates (phylum Ciliophora) endosymbiotic in echinoderms (phylum Echinodermata).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Systematic position of Discocephalus-like ciliates (Ciliophora: Spirotrichea) inferred from SSU rDNA and ontogenetic information

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

27 October 2018

Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3393704

27 October 2018

Ribosomal RNA trees misleading?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040635

21 January 2018

Genome architecture drives protein evolution in ciliates

1 reference

https://pubmed.ncbi.nlm.nih.gov/22808216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Proposition of a new classification of the phylum of the protozoa Ciliophora Doflein, 1901]

1 reference

https://pubmed.ncbi.nlm.nih.gov/22808216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread distribution of extensive chromosomal fragmentation in ciliates

1 reference

https://pubmed.ncbi.nlm.nih.gov/22808216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0040635

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34342205&oldid=2039473918"