(Q34350839)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models (English)

1 reference

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21 February 2020

5

1 reference

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21 February 2020

author name string

Matthew N Benedict

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Michael B Mundy

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Christopher S Henry

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Nicholas Chia

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

publication date

16 October 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

21 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

volume

10

1 reference

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21 February 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

page(s)

e1003882

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons CC0 License

21 February 2020

copyright license

start time

16 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

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Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

1 reference

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The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Comprehensive transposon mutant library of Pseudomonas aeruginosa

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Thirteen years of building constraint-based in silico models of Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Essential Bacillus subtilis genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Genes required for mycobacterial growth defined by high density mutagenesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

STRING: a database of predicted functional associations between proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Mevalonate and nonmevalonate pathways for the biosynthesis of isoprene units.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

The Pathway Tools software

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

A genome-wide strategy for the identification of essential genes in Staphylococcus aureus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenzae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

The non-mevalonate pathway of isoprenoids: genes, enzymes and intermediates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199484

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003882

Metabolic engineering of Clostridium acetobutylicum M5 for highly selective butanol production

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003882

Optimization based automated curation of metabolic reconstructions

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003882

In search of genome annotation consistency: solid gene clusters and how to use them

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25329157

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003882

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/BenedictMHCP14

21 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

25329157

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25329157%20AND%20SRC:MED&resulttype=core&format=json