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BLAST+: architecture and applications
scientific article
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instance of
scholarly article
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review article
1 reference
stated in
Europe PubMed Central
title
BLAST+: architecture and applications
(English)
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main subject
BLAST algorithm
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BLAST
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author
George Coulouris
series ordinal
2
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author name string
Christiam Camacho
series ordinal
1
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Vahram Avagyan
series ordinal
3
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Ning Ma
series ordinal
4
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Jason Papadopoulos
series ordinal
5
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Kevin Bealer
series ordinal
6
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Thomas L Madden
series ordinal
7
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language of work or name
English
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publication date
2009
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published in
BMC Bioinformatics
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volume
10
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page(s)
421
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issue
1
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exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-10-421
0 references
cites work
BLAT--the BLAST-like alignment tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
19 March 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
19 March 2017
Initial sequencing and comparative analysis of the mouse genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
19 March 2017
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
19 March 2017
A greedy algorithm for aligning DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
7 April 2017
NCBI BLAST: a better web interface
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
7 April 2017
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
7 April 2017
Analysis of compositionally biased regions in sequence databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
7 April 2017
Database indexing for production MegaBLAST searches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
12 September 2017
WindowMasker: window-based masker for sequenced genomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
12 September 2017
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
12 September 2017
Protein sequence similarity searches using patterns as seeds.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
12 September 2017
A deterministic finite automaton for faster protein hit detection in BLAST.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857
retrieved
29 November 2018
Identifiers
DOI
10.1186/1471-2105-10-421
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128558
Dimensions Publication ID
1050579230
0 references
OpenCitations bibliographic resource ID
128558
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128558
PMCID
2803857
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128558
PubMed ID
20003500
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128558
ResearchGate publication ID
40681365
0 references
Fatcat ID
release_qhqpojpbuvh4zffs4dvqs4beyi
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