(Q37228811)

19 August 2017

Database indexing for production MegaBLAST searches (English)

1 reference

19 August 2017

0 references

6

Alejandro A Schäffer

1 reference

19 August 2017

Aleksandr Morgulis

1

1 reference

19 August 2017

George Coulouris

2

1 reference

19 August 2017

Yan Raytselis

3

1 reference

19 August 2017

Thomas L Madden

4

1 reference

19 August 2017

Richa Agarwala

5

1 reference

19 August 2017

language of work or name

English

0 references

publication date

21 June 2008

1 reference

19 August 2017

8

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

19 August 2017

24

1 reference

19 August 2017

16

1 reference

19 August 2017

1757-1764

1 reference

Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

MICA: desktop software for comprehensive searching of DNA databases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

Efficient q-gram filters for finding all epsilon-matches over a given length

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

WindowMasker: window-based masker for sequenced genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

BLAT—The BLAST-Like Alignment Tool

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

SSAHA: a fast search method for large DNA databases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

A greedy algorithm for aligning DNA sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

Improved BLAST searches using longer words for protein seeding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2696921

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

3 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18567917

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN322

1 reference

journals/bioinformatics/MorgulisCRMAS08

19 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

19 August 2017

1 reference