(Q34350873)

1 August 2017

title

Selection on a variant associated with improved viral clearance drives local, adaptive pseudogenization of interferon lambda 4 (IFNL4) (English)

1 reference

1 August 2017

7

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1 August 2017

Felix M Key

1

0 references

Aida M Andrés

object named as

Aida M Andrés

8

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Ludmila Prokunina-Olsson

object named as

Ludmila Prokunina-Olsson

6

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author name string

Benjamin Peter

2

1 reference

1 August 2017

Megan Y Dennis

3

1 reference

1 August 2017

Emilia Huerta-Sánchez

4

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1 August 2017

Wei Tang

5

1 reference

1 August 2017

publication date

16 October 2014

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1 August 2017

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1 August 2017

volume

10

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1 August 2017

issue

10

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1 August 2017

page(s)

e1004681

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Creative Commons CC0 License

1 August 2017

copyright license

start time

16 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

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6 July 2018

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6 July 2018

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IL28B expression depends on a novel TT/-G polymorphism which improves HCV clearance prediction

6 July 2018

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6 July 2018

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6 July 2018

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The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

6 July 2018

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6 July 2018

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A variant upstream of IFNL3 (IL28B) creating a new interferon gene IFNL4 is associated with impaired clearance of hepatitis C virus

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Loss and gain of function in SERPINB11: an example of a gene under selection on standing variation, with implications for host-pathogen interactions

6 July 2018

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A systematic survey of loss-of-function variants in human protein-coding genes

6 July 2018

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Deciphering the interleukin 28B variants that better predict response to pegylated interferon-α and ribavirin therapy in HCV/HIV-1 coinfected patients

6 July 2018

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Evolutionary genetic dissection of human interferons

6 July 2018

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Genetic variation of the IL-28B promoter affecting gene expression

6 July 2018

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IL28B rs12979860 genotype and spontaneous clearance of hepatitis C virus in a multi-ethnic cohort of injection drug users: evidence for a supra-additive association

6 July 2018

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Identification of improved IL28B SNPs and haplotypes for prediction of drug response in treatment of hepatitis C using massively parallel sequencing in a cross-sectional European cohort

6 July 2018

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Demographic history and rare allele sharing among human populations

6 July 2018

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6 July 2018

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Human-specific loss of regulatory DNA and the evolution of human-specific traits

6 July 2018

1 reference

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Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance

6 July 2018

1 reference

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Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

IL28B genotype is associated with differential expression of intrahepatic interferon-stimulated genes in patients with chronic hepatitis C.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Interferon-lambda: a new addition to an old family

6 July 2018

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MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

6 July 2018

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6 July 2018

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Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

6 July 2018

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Genetic variation in IL28B and spontaneous clearance of hepatitis C virus

6 July 2018

1 reference

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IL28B is associated with response to chronic hepatitis C interferon-alpha and ribavirin therapy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Genome-wide association of IL28B with response to pegylated interferon-alpha and ribavirin therapy for chronic hepatitis C

6 July 2018

1 reference

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Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance

6 July 2018

1 reference

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6 July 2018

1 reference

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A genome-wide survey of the prevalence and evolutionary forces acting on human nonsense SNPs

6 July 2018

1 reference

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6 July 2018

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Genome-wide nucleotide-level mammalian ancestor reconstruction

6 July 2018

1 reference

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Multiple sequence alignment using ClustalW and ClustalX

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Genome-wide detection and characterization of positive selection in human populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

A second generation human haplotype map of over 3.1 million SNPs

6 July 2018

1 reference

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Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

PAML 4: phylogenetic analysis by maximum likelihood

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Estimation of the coancestry coefficient: basis for a short-term genetic distance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Convergent adaptation of human lactase persistence in Africa and Europe

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

The contributions of hepatitis B virus and hepatitis C virus infections to cirrhosis and primary liver cancer worldwide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Spread of an inactive form of caspase-12 in humans is due to recent positive selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

A map of recent positive selection in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Gene losses during human origins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Molecular signatures of natural selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

IFN-lambdas mediate antiviral protection through a distinct class II cytokine receptor complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

IL-28, IL-29 and their class II cytokine receptor IL-28R

6 July 2018

1 reference

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Generating samples under a Wright-Fisher neutral model of genetic variation

6 July 2018

1 reference

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Estimating progression to cirrhosis in chronic hepatitis C virus infection.

6 July 2018

1 reference

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Hitchhiking under positive Darwinian selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Nonsense-mediated mRNA decay in health and disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

When less is more: gene loss as an engine of evolutionary change

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

Interferon-induced gene expression is a stronger predictor of treatment response than IL28B genotype in patients with hepatitis C.

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004681

Variants in IL28B in liver recipients and donors correlate with response to peg-interferon and ribavirin therapy for recurrent hepatitis C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004681

Interferon-lambda serum levels in hepatitis C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004681

Hepatic ISG expression is associated with genetic variation in interleukin 28B and the outcome of IFN therapy for chronic hepatitis C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004681

The IFNL3/4 ΔG variant increases susceptibility to cytomegalovirus retinitis among HIV-infected patients

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199494

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25329461

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1004681

1 reference

1 August 2017

1 reference

1 August 2017

1 reference