(Q34354293)

1 August 2017

title

Temperature dependence and thermodynamics of Klenow polymerase binding to primed-template DNA. (English)

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1 August 2017

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Kausiki Datta

1

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1 August 2017

Andy J Wowor

series ordinal

2

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1 August 2017

Allison J Richard

series ordinal

3

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1 August 2017

Vince J LiCata

series ordinal

4

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1 August 2017

language of work or name

English

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publication date

9 December 2005

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1 August 2017

number of pages

13

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inferred from page(s)

published in

Biophysical Journal

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1 August 2017

volume

90

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1 August 2017

issue

5

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1 August 2017

page(s)

1739-1751

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Thermodynamics of the binding of Thermus aquaticus DNA polymerase to primed-template DNA

1 August 2017

cites work

1 reference

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6 July 2018

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Comparative thermal denaturation of Thermus aquaticus and Escherichia coli type 1 DNA polymerases

6 July 2018

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6 July 2018

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Phe 771 of Escherichia coli DNA polymerase I (Klenow fragment) is the major site for the interaction with the template overhang and the stabilization of the pre-polymerase ternary complex

6 July 2018

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Presence of 18-A long hydrogen bond track in the active site of Escherichia coli DNA polymerase I (Klenow fragment). Its requirement in the stabilization of enzyme-template-primer complex

6 July 2018

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Determinants of DNA mismatch recognition within the polymerase domain of the Klenow fragment

6 July 2018

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Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archael plasmid copy control protein

6 July 2018

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6 July 2018

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6 July 2018

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Adenine base unstacking dominates the observed enthalpy and heat capacity changes for the Escherichia coli SSB tetramer binding to single-stranded oligoadenylates

6 July 2018

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6 July 2018

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

6 July 2018

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6 July 2018

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Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69

6 July 2018

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Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry.

6 July 2018

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Water-mediated protein-DNA interactions: the relationship of thermodynamics to structural detail

6 July 2018

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Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry

6 July 2018

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A thumb subdomain mutant of the large fragment of Escherichia coli DNA polymerase I with reduced DNA binding affinity, processivity, and frameshift fidelity.

6 July 2018

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Structure of Taq polymerase with DNA at the polymerase active site

6 July 2018

1 reference

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Purification of Escherichia coli DNA polymerase I and Klenow fragment.

6 July 2018

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6 July 2018

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

6 July 2018

1 reference

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Structure of DNA polymerase I Klenow fragment bound to duplex DNA

6 July 2018

1 reference

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Thermodynamics of ligand binding to trp repressor

6 July 2018

1 reference

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Coupling of local folding to site-specific binding of proteins to DNA

6 July 2018

1 reference

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A thermodynamic study of the trp repressor-operator interaction

6 July 2018

1 reference

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Photoaffinity labeling of DNA template-primer binding site in Escherichia coli DNA polymerase I. Identification of involved amino acids

6 July 2018

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Apparent heat capacity change accompanying a nonspecific protein-DNA interaction. Escherichia coli SSB tetramer binding to oligodeoxyadenylates

6 July 2018

1 reference

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Crystal structure of Thermus aquaticus DNA polymerase

6 July 2018

1 reference

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Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability

6 July 2018

1 reference

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Function and structure relationships in DNA polymerases

6 July 2018

1 reference

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Construction of a plasmid that overproduces the large proteolytic fragment (Klenow fragment) of DNA polymerase I of Escherichia coli

6 July 2018

1 reference

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Selective Elimination of the Exonuclease Activity of the Deoxyribonucleic Acid Polymerase from Escherichia coli B by Limited Proteolysis

6 July 2018

1 reference

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Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Kinetic mechanism of DNA polymerase I (Klenow).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Genetic and crystallographic studies of the 3',5'-exonucleolytic site of DNA polymerase I.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Interaction of Escherichia coli DNA polymerase I with azidoDNA and fluorescent DNA probes: identification of protein-DNA contacts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Thermodynamics of structural stability and cooperative folding behavior in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Heat capacity and entropy changes in processes involving proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Extreme free energy of stabilization of Taq DNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Global Conformations, Hydrodynamics, and X-ray Scattering Properties of Taq and Escherichia coli DNA Polymerases in Solution

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Salt dependence of DNA binding by Thermus aquaticus and Escherichia coli DNA polymerases

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367323

Interaction of DNA polymerase I (Klenow fragment) with the single-stranded template beyond the site of synthesis

9 December 2018

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12 December 2020

Calorimetric analysis of lambda cI repressor binding to DNA operator sites

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12 December 2020

Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter

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12 December 2020

Significant discrepancies between van't Hoff and calorimetric enthalpies. III

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12 December 2020

Unusual behavior exhibited by multistranded guanine-rich DNA complexes

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12 December 2020

Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein

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12 December 2020

van't Hoff and calorimetric enthalpies II: effects of linked equilibria

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12 December 2020

Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements

1 reference

12 December 2020

Sequence-Specific DNA Binding by the Glucocorticoid Receptor DNA-Binding Domain Is Linked to a Salt-Dependent Histidine Protonation†

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12 December 2020

10.1529/BIOPHYSJ.105.071837

Identifiers

DOI

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1 August 2017

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1 August 2017

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