(Q34365542)

1 August 2017

title

High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice (English)

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high-throughput sequencing

1 August 2017

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2

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1 August 2017

Jian-Kang Zhu

8

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author name string

Blanca E Barrera-Figueroa

1

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1 August 2017

Zhigang Wu

3

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1 August 2017

Xuefeng Zhou

4

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1 August 2017

Jianhua Zhu

5

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1 August 2017

Hailing Jin

6

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1 August 2017

Renyi Liu

7

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1 August 2017

publication date

3 August 2012

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1 August 2017

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1 August 2017

volume

12

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1 August 2017

page(s)

132

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Identification of novel maize miRNAs by measuring the precision of precursor processing

1 August 2017

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1 reference

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6 July 2018

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6 July 2018

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Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

6 July 2018

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Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)

6 July 2018

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Salt and drought stresses induce the aberrant expression of microRNA genes in tobacco

6 July 2018

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Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

6 July 2018

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miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

6 July 2018

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Genome-wide survey and expression analysis suggest diverse roles of glutaredoxin gene family members during development and response to various stimuli in rice

6 July 2018

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6 July 2018

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Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses

6 July 2018

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6 July 2018

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Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

6 July 2018

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How many ways are there to generate small RNAs?

6 July 2018

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RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival

6 July 2018

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Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.).

6 July 2018

1 reference

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The biosynthetic pathways and biological scopes of plant small RNAs.

6 July 2018

1 reference

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Transcriptome-wide identification of microRNA targets in rice

6 July 2018

1 reference

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Rice MicroRNA effector complexes and targets

6 July 2018

1 reference

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Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana.

6 July 2018

1 reference

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SOAP2: an improved ultrafast tool for short read alignment

6 July 2018

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RNA-directed DNA methylation and demethylation in plants.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Heavy metal-regulated new microRNAs from rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Differential expression of miRNAs in response to salt stress in maize roots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

6 July 2018

1 reference

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The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance.

6 July 2018

1 reference

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

6 July 2018

1 reference

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Small RNA metabolism in Arabidopsis

6 July 2018

1 reference

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Widespread translational inhibition by plant miRNAs and siRNAs

6 July 2018

1 reference

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Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

6 July 2018

1 reference

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Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells

6 July 2018

1 reference

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Dual coding of siRNAs and miRNAs by plant transposable elements

6 July 2018

1 reference

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Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

6 July 2018

1 reference

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Identification of novel and candidate miRNAs in rice by high throughput sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

6 July 2018

1 reference

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A novel class of bacteria-induced small RNAs in Arabidopsis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Small RNAs as big players in plant abiotic stress responses and nutrient deprivation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

An expression atlas of rice mRNAs and small RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Identification of drought-induced microRNAs in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

A pathogen-inducible endogenous siRNA in plant immunity

6 July 2018

1 reference

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Arabidopsis endogenous small RNAs: highways and byways

6 July 2018

1 reference

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The small RNA world of plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

MicroRNAS and their regulatory roles in plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Post-transcriptional small RNA pathways in plants: mechanisms and regulations

6 July 2018

1 reference

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miRBase: microRNA sequences, targets and gene nomenclature

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Plant microRNA: a small regulatory molecule with big impact

6 July 2018

1 reference

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MicroRNA biogenesis and function in plants

6 July 2018

1 reference

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Ribo-gnome: the big world of small RNAs

6 July 2018

1 reference

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6 July 2018

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New insights into the complex and coordinated transcriptional regulation networks underlying rice seed development through cDNA chip-based analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Cloning and characterization of microRNAs from rice

6 July 2018

1 reference

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Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

MicroRNAs: genomics, biogenesis, mechanism, and function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

MicroRNA targets in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Plant transposable elements: where genetics meets genomics

6 July 2018

1 reference

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Flexible sequence similarity searching with the FASTA3 program package

6 July 2018

1 reference

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The significance of digital gene expression profiles

6 July 2018

1 reference

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Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

DNA methylation mediated by a microRNA pathway

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Profiling of cold-stress-responsive miRNAs in rice by microarrays.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

UV-B-responsive microRNAs in Populus tremula.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Two Arabidopsis 3-ketoacyl CoA synthase genes, KCS20 and KCS2/DAISY, are functionally redundant in cuticular wax and root suberin biosynthesis, but differentially controlled by osmotic stress

27 October 2018

1 reference

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Criteria for annotation of plant MicroRNAs

27 October 2018

1 reference

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Improved northern blot method for enhanced detection of small RNA.

27 October 2018

1 reference

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Short RNAs in environmental adaptation.

27 October 2018

1 reference

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Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3431262

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22862743

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2229-12-132

1 reference

Dimensions Publication ID

1 August 2017

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1 reference

1 August 2017

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