(Q34367279)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

review article

1 reference

title

DNA damage recognition and repair pathway coordination revealed by the structural biochemistry of DNA repair enzymes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

John A. Tainer

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

author name string

D J Hosfield

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

C D Mol

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

C D Putnam

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

S S Parikh

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

publication date

1 January 2001

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

Progress in Molecular Biology and Translational Science

11 November 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

volume

68

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

page(s)

315-347

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

Instability and decay of the primary structure of DNA

11 November 2019

cites work

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7 January 2021

Rate of depurination of native deoxyribonucleic acid

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7 January 2021

Repair of intrinsic DNA lesions

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7 January 2021

SOS mutagenesis results from up-regulation of translesion synthesis

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7 January 2021

Lesions in DNA: hurdles for polymerases

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7 January 2021

Crystal Structure of DNA Photolyase from Escherichia coli

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7 January 2021

Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction

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7 January 2021

Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents

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7 January 2021

O6-methylguanine-DNA methyltransferase activity and sensitivity to cyclophosphamide and cisplatin in human lung tumor xenografts

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7 January 2021

Inhibition of FEN-1 processing by DNA secondary structure at trinucleotide repeats

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7 January 2021

Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding

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7 January 2021

Crystal structure of the human O(6)-alkylguanine-DNA alkyltransferase

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7 January 2021

Hyperthermostable protein structure maintained by intra and inter-helix ion-pairs in archaeal O6-methylguanine-DNA methyltransferase

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7 January 2021

Conserved structural motifs governing the stoichiometric repair of alkylated DNA by O(6)-alkylguanine-DNA alkyltransferase

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7 January 2021

The winged-helix DNA-binding motif: another helix-turn-helix takeoff

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7 January 2021

Amino acid residues affecting the activity and stability of human O6-alkylguanine-DNA alkyltransferase.

1 reference

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7 January 2021

Investigation of the role of tyrosine-114 in the activity of human O6-alkylguanine-DNA alkyltranferase

1 reference

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7 January 2021

Reaction and binding of oligodeoxynucleotides containing analogues of O6-methylguanine with wild-type and mutant human O6-alkylguanine-DNA alkyltransferase

1 reference

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7 January 2021

O6-methylguanine methyltransferase in rat liver

1 reference

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7 January 2021

Probing of conformational changes in human O6-alkylguanine-DNA alkyl transferase protein in its alkylated and DNA-bound states by limited proteolysis

1 reference

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7 January 2021

Use of antibodies to human O6-alkylguanine-DNA alkyltransferase to study the content of this protein in cells treated with O6-benzylguanine or N-methyl-N'-nitro-N-nitrosoguanidine

1 reference

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7 January 2021

Ubiquitination-dependent proteolysis of O6-methylguanine-DNA methyltransferase in human and murine tumor cells following inactivation with O6-benzylguanine or 1,3-bis(2-chloroethyl)-1-nitrosourea

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Lethality of a dut (deoxyuridine triphosphatase) mutation in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Multiple mutant of Escherichia coli synthesizing virtually thymineless DNA during limited growth

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Uracil interference, a rapid and general method for defining protein-DNA interactions involving the 5-methyl group of thymines: the GCN4-DNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Thymine methyls and DNA-protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

DNA fragmentation and cytotoxicity from increased cellular deoxyuridylate

1 reference

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7 January 2021

The occurrence and consequences of deoxyuridine in DNA

1 reference

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7 January 2021

Nuclear and mitochondrial uracil-DNA glycosylases are generated by alternative splicing and transcription from different positions in the UNG gene

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Nuclear and mitochondrial splice forms of human uracil-DNA glycosylase contain a complex nuclear localisation signal and a strong classical mitochondrial localisation signal, respectively

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Characterization of distinct nuclear and mitochondrial forms of human deoxyuridine triphosphate nucleotidohydrolase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

The human dUTPase gene encodes both nuclear and mitochondrial isoforms. Differential expression of the isoforms and characterization of a cDNA encoding the mitochondrial species

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Crystal structure of a dUTPase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Specific interaction of DNA polymerase beta and DNA ligase I in a multiprotein base excision repair complex from bovine testis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex

1 reference

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7 January 2021

Human dUTP pyrophosphatase: uracil recognition by a beta hairpin and active sites formed by three separate subunits

1 reference

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7 January 2021

Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP)

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7 January 2021

Identification of tyrosine as a functional residue in the active site of Escherichia coli dUTPase.

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7 January 2021

Molecular cloning and characterization of deoxyuridine triphosphatase from feline immunodeficiency virus (FIV).

1 reference

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7 January 2021

Flexible glycine rich motif of Escherichia coli deoxyuridine triphosphate nucleotidohydrolase is important for functional but not for structural integrity of the enzyme

1 reference

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7 January 2021

The complete triphosphate moiety of non-hydrolyzable substrate analogues is required for a conformational shift of the flexible C-terminus in E. coli dUTP pyrophosphatase

1 reference

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7 January 2021

Kinetic characterization of dUTPase from Escherichia coli.

1 reference

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7 January 2021

Repair of oxidative damage to DNA: enzymology and biology

1 reference

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7 January 2021

Aging processes, DNA damage, and repair.

1 reference

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7 January 2021

DNA N-glycosylases and UV repair

1 reference

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7 January 2021

UV-induced pyrimidine hydrates in DNA are repaired by bacterial and mammalian DNA glycosylase activities.

1 reference

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7 January 2021

The enzymology of apurinic/apyrimidinic endonucleases

1 reference

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7 January 2021

Characterization of the Escherichia coli X-ray endonuclease, endonuclease III.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

1 reference

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7 January 2021

Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity

1 reference

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7 January 2021

MutY, an adenine glycosylase active on G-A mispairs, has homology to endonuclease III.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Structural basis for the excision repair of alkylation-damaged DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli.

1 reference

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7 January 2021

Excision of DNA adducts of nitrogen mustards by bacterial and mammalian 3-methyladenine-DNA glycosylases.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Cloning, overexpression, and biochemical characterization of the catalytic domain of MutY

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

DNA bending and a flip-out mechanism for base excision by the helix–hairpin–helix DNA glycosylase, Escherichia coli AlkA

1 reference

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7 January 2021

Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

1 reference

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7 January 2021

Properties of a Recombinant Human Uracil-DNA Glycosylase from the UNG Gene and Evidence that UNG Encodes the Major Uracil-DNA Glycosylase

1 reference

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7 January 2021

Uracil-DNA glycosylases preferentially excise mispaired uracil.

1 reference

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7 January 2021

The structural basis of specific base-excision repair by uracil-DNA glycosylase

1 reference

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7 January 2021

Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA

1 reference

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7 January 2021

Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase

1 reference

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7 January 2021

X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG

1 reference

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7 January 2021

Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions

1 reference

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7 January 2021

Structure and function of the multifunctional DNA-repair enzyme exonuclease III

1 reference

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7 January 2021

Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex

1 reference

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7 January 2021

Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

1 reference

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7 January 2021

A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

1 reference

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7 January 2021

Processivity of uracil DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase

1 reference

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7 January 2021

DNA repair mechanisms for the recognition and removal of damaged DNA bases.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Lessons learned from structural results on uracil-DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Induction of reversible complexes between eukaryotic DNA topoisomerase I and DNA-containing oxidative base damages. 7, 8-dihydro-8-oxoguanine and 5-hydroxycytosine

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Trapping of mammalian topoisomerase I and recombinations induced by damaged DNA containing nicks or gaps. Importance of DNA end phosphorylation and camptothecin effects

1 reference

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7 January 2021

Apurinic sites as mutagenic intermediates

1 reference

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7 January 2021

Structure of the human DNA repair gene HAP1 and its localisation to chromosome 14q 11.2-12

1 reference

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7 January 2021

A mouse DNA repair enzyme (APEX nuclease) having exonuclease and apurinic/apyrimidinic endonuclease activities: purification and characterization

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Escherichia coli proteins inducible by oxidative stress mediated by the superoxide radical

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Cellular role of yeast Apn1 apurinic endonuclease/3'-diesterase: repair of oxidative and alkylation DNA damage and control of spontaneous mutation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

The Caenorhabditis elegans gene CeAPN1 encodes a homolog of Escherichia coli and yeast apurinic/apyrimidinic endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Characterization of class II apurinic/apyrimidinic endonuclease activities in the human malaria parasite, Plasmodium falciparum

1 reference

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7 January 2021

The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

1 reference

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7 January 2021

DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]

1 reference

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7 January 2021

Abasic site binding by the human apurinic endonuclease, Ape, and determination of the DNA contact sites

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Incision Activity of Human Apurinic Endonuclease (Ape) at Abasic Site Analogs in DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Dynamics of the interaction of human apurinic endonuclease (Ape1) with its substrate and product

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Envisioning the molecular choreography of DNA base excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Human thymine DNA glycosylase binds to apurinic sites in DNA but is displaced by human apurinic endonuclease 1.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Solution structure of the single-strand break repair protein XRCC1 N-terminal domain

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

An interaction between the mammalian DNA repair protein XRCC1 and DNA ligase III

1 reference

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7 January 2021

Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1).

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Structure of chicken muscle triose phosphate isomerase determined crystallographically at 2.5Å resolution: using amino acid sequence data

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

The evolution of alpha/beta barrel enzymes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

High-resolution (1.5 A) crystal structure of phospholipase C from Bacillus cereus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Crystal structures of phosphate, iodide and iodate-inhibited phospholipase C from Bacillus cereus and structural investigations of the binding of reaction products and a substrate analogue

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Crystal structure of phospholipase C from Bacillus cereus complexed with a substrate analog.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Alpha-deoxyadenosine, a major anoxic radiolysis product of adenine in DNA, is a substrate for Escherichia coli endonuclease IV.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Involvement of flap endonuclease 1 in base excision DNA repair.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Proliferating Cell Nuclear Antigen Facilitates Excision in Long-patch Base Excision Repair

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Excision of Pyrimidine Dimers from Ultraviolet-Irradiated DNA by Exonucleases from Mammalian Cells

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Calf RTH-1 nuclease can remove the initiator RNAs of Okazaki fragments by endonuclease activity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

The characterization of a mammalian DNA structure-specific endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Homologous regions of Fen1 and p21Cip1 compete for binding to the same site on PCNA: a potential mechanism to co-ordinate DNA replication and repair

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

PCNA binding through a conserved motif

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

An interaction between the DNA repair factor XPA and replication protein A appears essential for nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Regulation of DNA replication and repair proteins through interaction with the front side of proliferating cell nuclear antigen

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

A yeast replicative helicase, Dna2 helicase, interacts with yeast FEN-1 nuclease in carrying out its essential function

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Newly discovered archaebacterial flap endonucleases show a structure-specific mechanism for DNA substrate binding and catalysis resembling human flap endonuclease-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Structural basis for the interaction of Ras with RalGDS

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Crystal structure of Thermus aquaticus DNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Mechanism of tracking and cleavage of adduct-damaged DNA substrates by the mammalian 5'- to 3'-exonuclease/endonuclease RAD2 homologue 1 or flap endonuclease 1.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

A novel mutation avoidance mechanism dependent on S. cerevisiae RAD27 is distinct from DNA mismatch repair

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Expansions of CAG repeat tracts are frequent in a yeast mutant defective in Okazaki fragment maturation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

Deletion analysis of human AP-endonuclease: minimum sequence required for the endonuclease activity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

The structure and evolution of alpha/beta barrel proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2801%2968110-8

7 January 2021

10.1016/S0079-6603(01)68110-8

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11554309%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

1 reference