(Q34372097)

1 August 2017

title

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae (English)

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NISC Comparative Sequencing Program

1 August 2017

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20

object named as

NISC Comparative Sequencing Program

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1 August 2017

21

James C Mullikin

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1 August 2017

Sean Conlan

1

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1 August 2017

Pamela J Thomas

2

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1 August 2017

Clayton Deming

3

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1 August 2017

Morgan Park

4

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1 August 2017

Anna F Lau

5

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1 August 2017

John P Dekker

6

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1 August 2017

Evan S Snitkin

7

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1 August 2017

Tyson A Clark

8

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1 August 2017

Khai Luong

9

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1 August 2017

Yi Song

10

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1 August 2017

Yu-Chih Tsai

11

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1 August 2017

Matthew Boitano

12

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1 August 2017

Jyoti Dayal

13

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1 August 2017

Shelise Y Brooks

14

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1 August 2017

Brian Schmidt

15

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1 August 2017

Alice C Young

16

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1 August 2017

James W Thomas

17

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1 August 2017

Gerard G Bouffard

18

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1 August 2017

Robert W Blakesley

19

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1 August 2017

Jonas Korlach

22

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1 August 2017

David K Henderson

23

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1 August 2017

Karen M Frank

24

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1 August 2017

Tara N Palmore

25

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1 August 2017

Julia A Segre

26

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1 August 2017

language of work or name

English

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publication date

1 September 2014

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Science Translational Medicine

1 August 2017

published in

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1 August 2017

volume

6

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1 August 2017

issue

254

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1 August 2017

page(s)

254ra126

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Health care: Bring microbial sequencing to hospitals

1 August 2017

cites work

1 reference

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Impact of CRISPR immunity on the emergence and virulence of bacterial pathogens

6 July 2018

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DNA transposon-based gene vehicles - scenes from an evolutionary drive

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Managing transmission of carbapenem-resistant enterobacteriaceae in healthcare settings: a view from the trenches

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

The advantages of SMRT sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Reversion to susceptibility of a carbapenem-resistant clinical isolate of Klebsiella pneumoniae producing KPC-3.

6 July 2018

1 reference

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

6 July 2018

1 reference

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6 July 2018

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"Down the drain": carbapenem-resistant bacteria in intensive care unit patients and handwashing sinks.

6 July 2018

1 reference

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Entering the era of bacterial epigenomics with single molecule real time DNA sequencing

6 July 2018

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Development of a clinically comprehensive database and a simple procedure for identification of molds from solid media by matrix-assisted laser desorption ionization-time of flight mass spectrometry

6 July 2018

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Pan-PCR, a computational method for designing bacterium-typing assays based on whole-genome sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Routine use of microbial whole genome sequencing in diagnostic and public health microbiology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Transforming clinical microbiology with bacterial genome sequencing.

6 July 2018

1 reference

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Outbreak of extended-spectrum β-lactamase-producing Klebsiella oxytoca infections associated with contaminated handwashing sinks(1).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Carbapenem resistance in Enterobacteriaceae: here is the storm!

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Klebsiella pneumoniae ST258 producing KPC-3 identified in italy carries novel plasmids and OmpK36/OmpK35 porin variants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Molecular dissection of an outbreak of carbapenem-resistant enterobacteriaceae reveals Intergenus KPC carbapenemase transmission through a promiscuous plasmid

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Evidence for several waves of global transmission in the seventh cholera pandemic

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Complete nucleotide sequence of KPC-3-encoding plasmid pKpQIL in the epidemic Klebsiella pneumoniae sequence type 258.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

A flexible and efficient template format for circular consensus sequencing and SNP detection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

The Significance of Pneumococcal Types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Evolution of MRSA during hospital transmission and intercontinental spread

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Genetic organization of transposase regions surrounding blaKPC carbapenemase genes on plasmids from Klebsiella strains isolated in a New York City hospital

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Real-time DNA sequencing from single polymerase molecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Rapid detection of blaKPC carbapenemase genes by real-time PCR.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

IS26-associated In4-type integrons forming multiresistance loci in enterobacterial plasmids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Consed: a graphical tool for sequence finishing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

Direct involvement of IS26 in an antibiotic resistance operon

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4203314

A carbapenem-resistant Klebsiella pneumoniae epidemic clone in Jerusalem: sequence type 512 carrying a plasmid encoding aac(6')-Ib

6 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3009845

Multilocus sequence typing of IncN plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3009845

Direct costs associated with a nosocomial outbreak of Salmonella infection: an ounce of prevention is worth a pound of cure

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3009845

Detection and spread of Escherichia coli possessing the plasmid-borne carbapenemase KPC-2 in Brooklyn, New York

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3009845

Antimicrobial resistance among Gram-negative bacilli causing infections in intensive care unit patients in the United States between 1993 and 2004.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3009845

Genetic diversity of capsular polysaccharide biosynthesis in Klebsiella pneumoniae clinical isolates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3009845

Emergence of carbapenem-resistant Enterobacteriaceae as causes of bloodstream infections in patients with hematologic malignancies

21 January 2018

1 reference

12 December 2020

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

1 reference

12 December 2020

The time is now for gene- and genome-based bacterial diagnostics: "you say you want a revolution"

1 reference

12 December 2020

Outcome of carbapenem resistant Klebsiella pneumoniae bloodstream infections

1 reference

12 December 2020

Outbreak of multidrug-resistant Pseudomonas aeruginosa colonization and infection secondary to imperfect intensive care unit room design

1 reference

12 December 2020

10.1126/SCITRANSLMED.3009845

Identifiers

DOI

1 reference

1 August 2017

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1 August 2017

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