(Q34372359)

1 August 2017

title

Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq. (English)

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1 August 2017

3

Sarah A Woodson

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author name string

Yi Peng

series ordinal

1

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1 August 2017

Toby J Soper

series ordinal

2

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1 August 2017

language of work or name

English

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publication date

16 September 2013

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Journal of Molecular Biology

1 August 2017

published in

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1 August 2017

volume

426

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1 August 2017

issue

2

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1 August 2017

page(s)

275-285

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Conserved arginines on the rim of Hfq catalyze base pair formation and exchange

1 August 2017

cites work

1 reference

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6 July 2018

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Bacterial small RNA-based negative regulation: Hfq and its accomplices

6 July 2018

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Hfq proximity and orientation controls RNA annealing

6 July 2018

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Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition

6 July 2018

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6 July 2018

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Multiple factors dictate target selection by Hfq-binding small RNAs

6 July 2018

1 reference

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Hfq and its constellation of RNA

6 July 2018

1 reference

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Major role for mRNA binding and restructuring in sRNA recruitment by Hfq.

6 July 2018

1 reference

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The RpoS-mediated general stress response in Escherichia coli

6 July 2018

1 reference

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Bacterial small RNA regulators: versatile roles and rapidly evolving variations

6 July 2018

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An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction

6 July 2018

1 reference

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Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

6 July 2018

1 reference

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SHAPE-directed RNA secondary structure prediction

6 July 2018

1 reference

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Positive regulation by small RNAs and the role of Hfq

6 July 2018

1 reference

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Dealing with oxidative stress and iron starvation in microorganisms: an overview

6 July 2018

1 reference

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Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

6 July 2018

1 reference

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A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system

6 July 2018

1 reference

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Accurate SHAPE-directed RNA structure determination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Mfold web server for nucleic acid folding and hybridization prediction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress in E. coli.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Assembling new Escherichia coli strains by transduction using phage P1.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947347

10.1016/J.JMB.2013.08.026

27 October 2018

Identifiers

DOI

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1 August 2017

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1 August 2017

1 reference