(Q34377420)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Chemically accurate coarse graining of double-stranded DNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

author name string

Alexey Savelyev

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

language of work or name

English

0 references

publication date

8 November 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

16 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

volume

107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

issue

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

page(s)

20340-20345

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

Theoretical perspectives on protein folding

16 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Nucleosome assembly depends on the torsion in the DNA molecule: a magnetic tweezers study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Molecular renormalization group coarse-graining of polymer chains: application to double-stranded DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Insights from coarse-grained Gō models for protein folding and dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Charge density of divalent metal cations determines RNA stability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Electrostatic, steric, and hydration interactions favor Na(+) condensation around DNA compared with K(+).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Evaluation of elastic properties of atomistic DNA models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Local molecular field theory for effective attractions between like charged objects in systems with strong Coulomb interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Flexible histone tails in a new mesoscopic oligonucleosome model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Ion motions in molecular dynamics simulations on DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

Ionic effects on the elasticity of single DNA molecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996671

A coarse grain model for DNA.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Brownian dynamics of double-stranded DNA in periodic systems with discrete salt

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Polymer chain models of DNA and chromatin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Molecular renormalization group coarse-graining of electrolyte solutions: application to aqueous NaCl and KCl.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Polyionic charge density plays a key role in differential recognition of mobile ions by biopolymers

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Coarse grain models and the computer simulation of soft materials

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Charge Inversion at High Ionic Strength Studied by Streaming Currents

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001163107

Flow dichroism of T7 DNA as a function of salt concentration

21 January 2018

1 reference

12 December 2020

Minimalist protein model as a diagnostic tool for misfolding and aggregation

1 reference

12 December 2020

Inter-DNA electrostatics from explicit solvent molecular dynamics simulations

1 reference

12 December 2020

Investigation of the flexibility of DNA using transient electric birefringence

1 reference

12 December 2020

Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1001163107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21059937%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference