(Q53631626)

16 May 2018

title

Polymer chain models of DNA and chromatin. (English)

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16 May 2018

author

Jörg Langowski

series ordinal

1

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16 May 2018

publication date

20 March 2006

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16 May 2018

European Physical Journal E

published in

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16 May 2018

volume

19

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16 May 2018

issue

3

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16 May 2018

page(s)

241-249

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16 May 2018

Brownian dynamics simulations of supercoiled DNA with bent sequences

cites work

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12 December 2020

Crystal structure of the nucleosome core particle at 2.8 A resolution

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12 December 2020

Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers.

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12 December 2020

Salt-induced conformation and interaction changes of nucleosome core particles.

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12 December 2020

Structure of the 300A chromatin filament: X-ray diffraction from oriented samples

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12 December 2020

Modeling salt-mediated electrostatics of macromolecules: the discrete surface charge optimization algorithm and its application to the nucleosome

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12 December 2020

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

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12 December 2020

Kinetics of site-site interactions in supercoiled DNA with bent sequences

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12 December 2020

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

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12 December 2020

A chromatin folding model that incorporates linker variability generates fibers resembling the native structures

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12 December 2020

Quantitative comparison of DNA looping in vitro and in vivo: chromatin increases effective DNA flexibility at short distances

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12 December 2020

Intrachain reactions of supercoiled DNA simulated by Brownian dynamics

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12 December 2020

Genome function and nuclear architecture: from gene expression to nanoscience

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12 December 2020

Modeling of intramolecular reactions of polymers: an efficient method based on Brownian dynamics simulations.

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12 December 2020

The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon

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12 December 2020

Higher-order structure of chromatin and chromosomes

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12 December 2020

Evidence for the organization of chromatin in megabase pair-sized loops arranged along a random walk path in the human G0/G1 interphase nucleus

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12 December 2020

Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts

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12 December 2020

Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques.

1 reference

12 December 2020

Salt effects on the structure and internal dynamics of superhelical DNAs studied by light scattering and Brownian dynamics

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12 December 2020

Computer simulation of the 30-nanometer chromatin fiber.

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12 December 2020

Sequence-dependent elastic properties of DNA.

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12 December 2020

Single-molecule analysis of chromatin.

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12 December 2020

DNA spools under tension

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12 December 2020

MENT, a heterochromatin protein that mediates higher order chromatin folding, is a new serpin family member

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12 December 2020

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

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12 December 2020

Ionic effects on the elasticity of single DNA molecules

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12 December 2020

Entropic elasticity of lambda-phage DNA

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12 December 2020

DNA persistence length revisited

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12 December 2020

Chiral discotic columnar germs of nucleosome core particles.

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12 December 2020

Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model

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12 December 2020

Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy

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12 December 2020

Comparison of hard-cylinder and screened Coulomb interactions in the modeling of supercoiled DNAs.

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12 December 2020

Electrical double layer, zeta potential, and electrophoretic charge of double-stranded DNA

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12 December 2020

Single-molecule studies of DNA mechanics

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12 December 2020

DNA supercoiling, localized bending and thermal fluctuations

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12 December 2020

Solenoidal model for superstructure in chromatin

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12 December 2020

Chromatin higher order structure: chasing a mirage?

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12 December 2020

Bilayers of nucleosome core particles

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12 December 2020

Polylysine-coated mica can be used to observe systematic changes in the supercoiled DNA conformation by scanning force microscopy in solution

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12 December 2020

What determines the folding of the chromatin fiber?

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12 December 2020

X-ray diffraction characterization of the dense phases formed by nucleosome core particles.

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12 December 2020

A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes

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12 December 2020

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat

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12 December 2020

Salt-dependent DNA superhelix diameter studied by small angle neutron scattering measurements and Monte Carlo simulations

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12 December 2020

Diffusion-controlled intrachain reactions of supercoiled DNA: Brownian Dynamics simulations

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12 December 2020

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

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12 December 2020

Capturing chromosome conformation

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12 December 2020

Dependence of the torsional rigidity of DNA on base composition

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12 December 2020

DNA: an extensible molecule.

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12 December 2020

Studies of metaphase and interphase chromosomes using fluorescence in situ hybridization

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12 December 2020

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

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12 December 2020

Trajectory of nucleosomal linker DNA studied by fluorescence resonance energy transfer

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12 December 2020

Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling

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12 December 2020

Liquid crystalline ordering of nucleosome core particles under macromolecular crowding conditions: evidence for a discotic columnar hexagonal phase.

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12 December 2020

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling

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12 December 2020

Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure

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12 December 2020

The nucleosome: a transparent, slippery, sticky and yet stable DNA-protein complex.

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12 December 2020

DNA folding: structural and mechanical properties of the two-angle model for chromatin

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12 December 2020

Modulation of intramolecular interactions in superhelical DNA by curved sequences: a Monte Carlo simulation study

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12 December 2020

Nucleosome interactions in chromatin: fiber stiffening and hairpin formation

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12 December 2020

Probability of DNA knotting and the effective diameter of the DNA double helix

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12 December 2020

10.1140/EPJE/I2005-10067-9

Identifiers

DOI

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16 May 2018

Dimensions Publication ID

1031943577

0 references

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16 May 2018