(Q34378120)

1 August 2017

title

Retro-MoRFs: identifying protein binding sites by normal and reverse alignment and intrinsic disorder prediction (English)

1 reference

1 August 2017

3

Vladimir N Uversky

1 reference

1 August 2017

Bin Xue

1

1 reference

1 August 2017

A Keith Dunker

series ordinal

2

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1 August 2017

language of work or name

English

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publication date

29 September 2010

1 reference

International Journal of Molecular Sciences

1 August 2017

published in

1 reference

1 August 2017

volume

11

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1 August 2017

issue

10

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1 August 2017

page(s)

3725-3747

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Creative Commons Attribution 4.0 International

1 August 2017

copyright license

start time

29 September 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Normal and cancer-related functions of the p160 steroid receptor co-activator (SRC) family

6 July 2018

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Unfoldomics of human diseases: linking protein intrinsic disorder with diseases

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The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation

6 July 2018

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Folding behavior of a backbone-reversed protein: reversible polyproline type II to beta-sheet thermal transitions in retro-GroES multimers with GroES-like features.

6 July 2018

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Mining alpha-helix-forming molecular recognition features with cross species sequence alignments

6 July 2018

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6 July 2018

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Intrinsic disorder in the Protein Data Bank

6 July 2018

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Analysis of molecular recognition features (MoRFs)

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Structural mechanism of the bromodomain of the coactivator CBP in p53 transcriptional activation

6 July 2018

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Molecular basis for Gcn5/PCAF histone acetyltransferase selectivity for histone and nonhistone substrates

6 July 2018

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Specificity determinants of recruitment peptides bound to phospho-CDK2/cyclin A

6 July 2018

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Determinants of the polyproline II helix from modeling studies

6 July 2018

1 reference

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Identification and functions of usefully disordered proteins

6 July 2018

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Analysis of protein sequence/structure similarity relationships

6 July 2018

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Structure of a Sir2 enzyme bound to an acetylated p53 peptide

6 July 2018

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Intrinsic disorder and protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Can we infer peptide recognition specificity mediated by SH3 domains?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Intrinsically disordered protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Sequence complexity of disordered protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Functional interaction between the p160 coactivator proteins and the transcriptional enhancer factor family of transcription factors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Structure of the negative regulatory domain of p53 bound to S100B(betabeta)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

The steroid receptor coactivator, GRIP-1, is necessary for MEF-2C-dependent gene expression and skeletal muscle differentiation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

The retro-GCN4 leucine zipper sequence forms a stable three-dimensional structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Why reversing the sequence of the alpha domain of human metallothionein-2 does not change its metal-binding and folding characteristics

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

A functional protein pore with a "retro" transmembrane domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

SH3 domains and drug design: ligands, structure, and biological function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Reading protein sequences backwards

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

The coactivator TIF2 contains three nuclear receptor-binding motifs and mediates transactivation through CBP binding-dependent and -independent pathways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Inverse sequence similarity in proteins and its relation to the three-dimensional fold.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

A signature motif in transcriptional co-activators mediates binding to nuclear receptors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

The transcriptional co-activator p/CIP binds CBP and mediates nuclear-receptor function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Does a backwardly read protein sequence have a unique native state?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Amphipathic helix motif: classes and properties

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

A local algorithm for DNA sequence alignment with inversions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Computer programs to identify and classify amphipathic alpha helical domains.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Reversal of peptide backbone direction may result in the mirroring of protein structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Retroinverso mimetics of S peptide

6 July 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

Inverse sequence similarity of proteins does not imply structural similarity

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

A backbone-reversed form of an all-beta alpha-crystallin domain from a small heat-shock protein (retro-HSP12.6) folds and assembles into structured multimers.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

Coupled folding and binding with alpha-helix-forming molecular recognition elements

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

Predicting intrinsic disorder from amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

Nuclear receptor-binding sites of coactivators glucocorticoid receptor interacting protein 1 (GRIP1) and steroid receptor coactivator 1 (SRC-1): multiple motifs with different binding specificities

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996789

Improving the Packing and Accuracy of NMR Structures with a Pseudopotential for the Radius of Gyration

27 October 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS11103725

Optimizing long intrinsic disorder predictors with protein evolutionary information

21 January 2018

1 reference

12 December 2020

Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation

1 reference

12 December 2020

Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53

1 reference

12 December 2020

Structural and functional studies on Ribonuclease S, retro S and retro-inverso S peptides

1 reference

12 December 2020

Identifiers

DOI

10.3390/IJMS11103725

1 reference

1 August 2017

1 reference

1 August 2017

1 reference