(Q34379264)

1 August 2017

title

Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data (English)

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1 August 2017

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Jialei Duan

1

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1 August 2017

Chuan Xia

2

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1 August 2017

Guangyao Zhao

3

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1 August 2017

Jizeng Jia

4

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1 August 2017

Xiuying Kong

5

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1 August 2017

language of work or name

English

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publication date

14 August 2012

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1 August 2017

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1 August 2017

volume

13

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1 August 2017

page(s)

392

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De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in peanut (Arachis hypogaea L.).

1 August 2017

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6 July 2018

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Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

6 July 2018

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Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq.

6 July 2018

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Transcriptome analysis of H2O2-treated wheat seedlings reveals a H2O2-responsive fatty acid desaturase gene participating in powdery mildew resistance

6 July 2018

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RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).

6 July 2018

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The Pfam protein families database

6 July 2018

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Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome

6 July 2018

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Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence

6 July 2018

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De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

6 July 2018

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

6 July 2018

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Scaffolding pre-assembled contigs using SSPACE

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

De novo assembly and analysis of RNA-seq data.

6 July 2018

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6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

Optimization of de novo transcriptome assembly from next-generation sequencing data

6 July 2018

1 reference

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Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

6 July 2018

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Fast and accurate long-read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

De novo transcriptome assembly with ABySS.

6 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

PlantGDB: a resource for comparative plant genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

The TIGR Plant Transcript Assemblies database

6 July 2018

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

6 July 2018

1 reference

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6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

BLAT—The BLAST-Like Alignment Tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485621

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-392

21 January 2018

Identifiers

DOI

10.1186/1471-2164-13-392

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1 August 2017

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1 August 2017

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