(Q33714197)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20935650%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

title

De novo assembly and analysis of RNA-seq data (English)

1 reference

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15 February 2020

1 reference

1 reference

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6

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15 February 2020

Malachi Griffith

11

1 reference

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15 February 2020

Timothee Cezard

14

1 reference

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15 February 2020

Steven Jones

27

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15 February 2020

Pamela A. Hoodless

28

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15 February 2020

Inanc Birol

29

1 reference

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15 February 2020

3

Readman Chiu

1 reference

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15 February 2020

author name string

Gordon Robertson

1

1 reference

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15 February 2020

Jacqueline Schein

2

1 reference

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15 February 2020

Richard Corbett

4

1 reference

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15 February 2020

Matthew Field

5

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15 February 2020

Karen Mungall

7

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15 February 2020

Sam Lee

8

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15 February 2020

Hisanaga Mark Okada

9

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15 February 2020

Jenny Q Qian

10

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15 February 2020

Anthony Raymond

12

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15 February 2020

Nina Thiessen

13

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15 February 2020

Yaron S Butterfield

15

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15 February 2020

Richard Newsome

16

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15 February 2020

Simon K Chan

17

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15 February 2020

Rong She

18

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15 February 2020

Richard Varhol

19

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15 February 2020

Baljit Kamoh

20

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15 February 2020

Anna-Liisa Prabhu

21

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15 February 2020

Angela Tam

22

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15 February 2020

YongJun Zhao

23

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15 February 2020

Richard A Moore

24

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15 February 2020

Martin Hirst

25

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15 February 2020

Marco A Marra

26

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15 February 2020

publication date

10 October 2010

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15 February 2020

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15 February 2020

volume

7

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15 February 2020

page(s)

909-912

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15 February 2020

issue

11

1 reference

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https://scigraph.springernature.com/pub.10.1038/nmeth.1517

15 February 2020

exact match

0 references

cites work

ASTD: The Alternative Splicing and Transcript Diversity database

1 reference

12 December 2020

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

1 reference

12 December 2020

BLAT—The BLAST-Like Alignment Tool

1 reference

12 December 2020

Optimal spliced alignments of short sequence reads

1 reference

12 December 2020

Problems and solutions for estimating indel rates and length distributions

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12 December 2020

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing

1 reference

12 December 2020

Microindel detection in short-read sequence data

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12 December 2020

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

1 reference

12 December 2020

TopHat: discovering splice junctions with RNA-Seq

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12 December 2020

Assembling genomes using short-read sequencing technology.

1 reference

12 December 2020

Alternative expression analysis by RNA sequencing

1 reference

12 December 2020

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

12 December 2020

Sense from sequence reads: methods for alignment and assembly

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12 December 2020

The transcriptional landscape of the yeast genome defined by RNA sequencing

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12 December 2020

Computation for ChIP-seq and RNA-seq studies

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12 December 2020

Comprehensive splice-site analysis using comparative genomics

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12 December 2020

The UCSC Genome Browser database: update 2010

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12 December 2020

RNA-Seq gene expression estimation with read mapping uncertainty

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12 December 2020

ABySS: a parallel assembler for short read sequence data

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12 December 2020

Fast and SNP-tolerant detection of complex variants and splicing in short reads

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12 December 2020

Modeling non-uniformity in short-read rates in RNA-Seq data

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12 December 2020

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

1 reference

12 December 2020

1 reference

12 December 2020

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

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12 December 2020

Stochastic noise in splicing machinery

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12 December 2020

De novo transcriptome assembly with ABySS.

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12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

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12 December 2020

Automated generation of heuristics for biological sequence comparison

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12 December 2020

How to map billions of short reads onto genomes

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12 December 2020

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12 December 2020

Global and unbiased detection of splice junctions from RNA-seq data

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12 December 2020

Identifiers

DOI

10.1038/NMETH.1517

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20935650%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

15 February 2020

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1 reference