(Q34381097)

1 August 2017

title

Topology of viral evolution (English)

1 reference

1 August 2017

3

Raul Rabadan

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1 August 2017

2

Gunnar Carlsson

1 reference

1 August 2017

Joseph Minhow Chan

1

1 reference

1 August 2017

language of work or name

English

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publication date

29 October 2013

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Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

published in

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1 August 2017

volume

110

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1 August 2017

issue

46

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1 August 2017

page(s)

18566-18571

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maintained by WikiProject

1 August 2017

WikiProject Mathematics

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cites work

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Estimating reassortment rates in co-circulating Eurasian swine influenza viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Recombination in hepatitis C virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Recombination in West Nile Virus: minimal contribution to genomic diversity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

The evolutionary genetics and emergence of avian influenza viruses in wild birds

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Contribution of Recombination to the Evolution of Human Immunodeficiency Viruses Expressing Resistance to Antiretroviral Treatment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

A simple and robust statistical test for detecting the presence of recombination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Application of phylogenetic networks in evolutionary studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Dynamics of HIV-1 recombination in its natural target cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

The causes and consequences of HIV evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Microevolution and virulence of dengue viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Recombination in evolutionary genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

A coalescent-based method for detecting and estimating recombination from gene sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Evidence for recombination in natural populations of dengue virus type 1 based on the analysis of complete genome sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Phylogenetic classification and the universal tree

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Widespread intra-serotype recombination in natural populations of dengue virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Networks and viral evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

6 July 2018

How clonal are bacteria?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Analyzing the mosaic structure of genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

Nonrandom association of parental genes in influenza A virus recombinants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3831954

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1313480110

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1313480110

Dual multiple change-point model leads to more accurate recombination detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1313480110

Optimal, efficient reconstruction of phylogenetic networks with constrained recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1313480110

Characteristic features of InfA-15 monoclonal antibody recognizing H1, H3, and H5 subtypes of hemagglutinin of influenza virus A type.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1313480110

Evidence of intratypic recombination in natural populations of hepatitis C virus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1313480110

Using Consensus Networks to Visualize Contradictory Evidence for Species Phylogeny

21 January 2018

1 reference

12 December 2020

Stochastic errors in DNA evolution and molecular phylogeny

1 reference

12 December 2020

Estimating the recombination parameter of a finite population model without selection

1 reference

12 December 2020

Detecting recombination from gene trees

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1313480110

1 reference

1 August 2017

0 references

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1 August 2017

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