(Q34382019)

1 August 2017

title

Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model (English)

1 reference

1 August 2017

0 references

Papapit Ingkasuwan

1

1 reference

1 August 2017

Supatcharee Netrphan

2

1 reference

1 August 2017

Sukon Prasitwattanaseree

3

1 reference

1 August 2017

Morakot Tanticharoen

4

1 reference

1 August 2017

Sakarindr Bhumiratana

5

1 reference

1 August 2017

Asawin Meechai

6

1 reference

1 August 2017

Jeerayut Chaijaruwanich

7

1 reference

1 August 2017

Hideki Takahashi

8

1 reference

1 August 2017

Supapon Cheevadhanarak

9

1 reference

1 August 2017

publication date

16 August 2012

1 reference

1 August 2017

1 reference

1 August 2017

volume

6

1 reference

1 August 2017

page(s)

100

1 reference

describes a project that uses

1 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3490714/fullTextXML

inferred from PubMed Central ID database lookup

affy

object named as

Affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1752-0509-6-100

0 references

cites work

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Regulation of starch metabolism: the age of enlightenment?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Arabidopsis gene co-expression network and its functional modules.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

From gene expression to gene regulatory networks in Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

ATTED-II provides coexpressed gene networks for Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Beta-AMYLASE4, a noncatalytic protein required for starch breakdown, acts upstream of three active beta-amylases in Arabidopsis chloroplasts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Global analysis of della direct targets in early gibberellin signaling in Arabidopsis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

An Arabidopsis gene network based on the graphical Gaussian model.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

AthaMap web tools for the analysis and identification of co-regulated genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

AthaMap: from in silico data to real transcription factor binding sites.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

A redox-regulated chloroplast protein phosphatase binds to starch diurnally and functions in its accumulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

EDGE: extraction and analysis of differential gene expression.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Significance analysis of time course microarray experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Redox regulation of carbon storage and partitioning in response to light and sugars.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Alpha-glucan, water dikinase (GWD): a plastidic enzyme with redox-regulated and coordinated catalytic activity and binding affinity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Recent developments in understanding the regulation of starch metabolism in higher plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the fo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Genome-wide insertional mutagenesis of Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Inferring genetic networks and identifying compound mode of action via expression profiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Starch mobilization in leaves

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Transcriptional regulatory networks in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

A new non-linear normalization method for reducing variability in DNA microarray experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Downregulation of a chloroplast-targeted beta-amylase leads to a starch-excess phenotype in leaves.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Orchestrated transcription of key pathways in Arabidopsis by the circadian clock

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Understanding and influencing starch biochemistry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Adenosine diphosphate glucose pyrophosphorylase. A regulatory enzyme in the biosynthesis of starch in spinach leaf chloroplasts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Early flower development in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

A previously unknown maltose transporter essential for starch degradation in leaves

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

The phenotype of soluble starch synthase IV defective mutants of Arabidopsis thaliana suggests a novel function of elongation enzymes in the control of starch granule formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Starch granule initiation in Arabidopsis requires the presence of either class IV or class III starch synthases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: a novel regulatory mechanism linking starch synthesis to the sucrose supply

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Enzymatic properties and regulation of ZPU1, the maize pullulanase-type starch debranching enzyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Oscillation of mRNA level and activity of granule-bound starch synthase I in Arabidopsis leaves during the day/night cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Inferring gene regulatory networks from multiple microarray datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

An empirical Bayes approach to inferring large-scale gene association networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

An Arabidopsis gene encoding a chloroplast-targeted beta-amylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Daylength and circadian effects on starch degradation and maltose metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

RNA interference of Arabidopsis beta-amylase8 prevents maltose accumulation upon cold shock and increases sensitivity of PSII photochemical efficiency to freezing stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns and modes of regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

CEO1, a new protein from Arabidopsis thaliana, protects yeast against oxidative damage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Effects of sulfur nutrition on expression of the soybean seed storage protein genes in transgenic petunia

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Redox regulation of a novel plastid-targeted beta-amylase of Arabidopsis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Activation of spinach pullulanase by reduction results in a decrease in the number of isomeric forms

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490714

Starch synthesis in Arabidopsis. Granule synthesis, composition, and structure

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Quantification of starch in plant tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-100

Genes encoding pseudo-response regulators: insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana

21 January 2018

1 reference

12 December 2020

A genetic study of the Arabidopsis circadian clock with reference to the TIMING OF CAB EXPRESSION 1 (TOC1) gene

1 reference

12 December 2020

Altered gravitropic response, amyloplast sedimentation and circumnutation in the Arabidopsis shoot gravitropism 5 mutant are associated with reduced starch levels

1 reference

12 December 2020

Ozone-Sensitive Arabidopsis rcd1 Mutant Reveals Opposite Roles for Ethylene and Jasmonate Signaling Pathways in Regulating Superoxide-Dependent Cell Death

1 reference

12 December 2020

Mechanism of reductive activation of potato tuber ADP-glucose pyrophosphorylase

1 reference

12 December 2020

Identifiers

DOI

10.1186/1752-0509-6-100

1 reference

journals/bmcsb/IngkasuwanNPTBMCTC12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

1 August 2017

1 reference