(Q34383218)

English

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

scientific article

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scholarly article

1 reference

Europe PubMed Central

1 August 2017

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools (English)

1 reference

Europe PubMed Central

1 August 2017

natural language processing

1 reference

based on heuristic

inferred from title

biomedical natural language processing

1 reference

based on heuristic

inferred from title

Lawrence Hunter

15

1 reference

Europe PubMed Central

1 August 2017

14

object named as

Martha Palmer

0 references

object named as

Karin Verspoor

1

0 references

13

object named as

Michael Bada

1 reference

Europe PubMed Central

1 August 2017

Kevin Bretonnel Cohen

2

object named as

Kevin Bretonnel Cohen

1 reference

Europe PubMed Central

1 August 2017

Arrick Lanfranchi

3

object named as

Arrick Lanfranchi

1 reference

Europe PubMed Central

1 August 2017

William Baumgartner

12

object named as

William A Baumgartner

1 reference

Europe PubMed Central

1 August 2017

author name string

Colin Warner

4

1 reference

Europe PubMed Central

1 August 2017

Helen L Johnson

5

1 reference

Europe PubMed Central

1 August 2017

Christophe Roeder

6

1 reference

Europe PubMed Central

1 August 2017

Jinho D Choi

7

1 reference

Europe PubMed Central

1 August 2017

Christopher Funk

8

1 reference

Europe PubMed Central

1 August 2017

Yuriy Malenkiy

9

1 reference

Europe PubMed Central

1 August 2017

Miriam Eckert

10

1 reference

Europe PubMed Central

1 August 2017

Nianwen Xue

11

1 reference

Europe PubMed Central

1 August 2017

publication date

17 August 2012

1 reference

Europe PubMed Central

1 August 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

1 August 2017

13

1 reference

Europe PubMed Central

1 August 2017

207

1 reference

Europe PubMed Central

1 August 2017

copyright license

Creative Commons Attribution 2.0 Generic

17 August 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-207

0 references

Concept annotation in the CRAFT corpus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Parenthetically speaking: classifying the contents of parentheses for text mining.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Entrez Gene: gene-centered information at NCBI

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

The structural and content aspects of abstracts versus bodies of full text journal articles are different

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

The textual characteristics of traditional and Open Access scientific journals are similar

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Evaluating contributions of natural language parsers to protein-protein interaction extraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Overview of BioCreative II gene normalization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Overview of BioCreative II gene mention recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Can bibliographic pointers for known biological data be found automatically? Protein interactions as a case study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

BANNER: an executable survey of advances in biomedical named entity recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Essie: a concept-based search engine for structured biomedical text

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

BioInfer: a corpus for information extraction in the biomedical domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Benchmarking natural-language parsers for biological applications using dependency graphs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Empirical data on corpus design and usage in biomedical natural language processing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

GENETAG: a tagged corpus for gene/protein named entity recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

BioCreAtIvE task 1A: gene mention finding evaluation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

The Sequence Ontology: a tool for the unification of genome annotations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Information extraction from full text scientific articles: where are the keywords?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

Tagging gene and protein names in biomedical text

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

6 July 2018

BioRAT: extracting biological information from full-length papers.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-207

21 January 2018

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-207

21 January 2018

Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

27 October 2018

GENIA corpus--semantically annotated corpus for bio-textmining.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3483229

27 October 2018

Improving the inter-corpora compatibility for protein annotations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22901054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-13-207

1 reference

Europe PubMed Central

1 August 2017

DBLP publication ID

journals/bmcbi/VerspoorCLWJRCFMEXBBPH12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

ResearchGate publication ID

0 references

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