(Q34387997)

1 August 2017

Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment (English)

1 reference

1 August 2017

whole genome sequencing

1 reference

2

1 reference

1 August 2017

Daniel J Kvitek

1

1 reference

1 August 2017

21 November 2013

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1 August 2017

1 reference

1 August 2017

9

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1 August 2017

11

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1 August 2017

e1003972

1 reference

Creative Commons Attribution 3.0 Unported

1 August 2017

start time

21 November 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

6 July 2018

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6 July 2018

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The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast

6 July 2018

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6 July 2018

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Oncogenic Kras maintains pancreatic tumors through regulation of anabolic glucose metabolism

6 July 2018

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Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

6 July 2018

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Evolution of the cancer genome

6 July 2018

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Clonal evolution in cancer

6 July 2018

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Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency

6 July 2018

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Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

6 July 2018

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Genetic variation and the fate of beneficial mutations in asexual populations

6 July 2018

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

6 July 2018

1 reference

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Loss of genetic redundancy in reductive genome evolution.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

6 July 2018

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

6 July 2018

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A high frequency of beneficial mutations across multiple fitness components in Saccharomyces cerevisiae

6 July 2018

1 reference

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Whole-genome sequencing of a laboratory-evolved yeast strain

6 July 2018

1 reference

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E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Genome evolution and adaptation in a long-term experiment with Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Genome-wide mutational diversity in an evolving population of Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The early steps of glucose signalling in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Glucose-stimulated cAMP-protein kinase A pathway in yeast Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Adaptive mutations in bacteria: high rate and small effects

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Beneficial mutation selection balance and the effect of linkage on positive selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The speed of evolution and maintenance of variation in asexual populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Robustness and evolution: concepts, insights and challenges from a developmental model system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Mutations of intermediate effect are responsible for adaptation in evolving Pseudomonas fluorescens populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Tests of parallel molecular evolution in a long-term experiment with Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Ras, PI(3)K and mTOR signalling controls tumour cell growth

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The genetic theory of adaptation: a brief history

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Spontaneous mutations in diploid Saccharomyces cerevisiae: more beneficial than expected

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The population genetics of ecological specialization in evolving Escherichia coli populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Different trajectories of parallel evolution during viral adaptation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The genome sequence of Rickettsia prowazekii and the origin of mitochondria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Positioning of cell growth and division after osmotic stress requires a MAP kinase pathway.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The molecular diversity of adaptive convergence.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Glucose as a hormone: receptor-mediated glucose sensing in the yeast Saccharomyces cerevisiae

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The novel yeast PAS kinase Rim 15 orchestrates G0-associated antioxidant defense mechanisms

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

A comprehensive model of mutations affecting fitness and inferences for Arabidopsis thaliana.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Evolutionary biology. Use it or lose it

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

The fate of competing beneficial mutations in an asexual population.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3836717

Spontaneous mutations in diploid Saccharomyces cerevisiae: another thousand cell generations

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24278038

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mth1 receives the signal given by the glucose sensors Snf3 and Rgt2 in Saccharomyces cerevisiae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24278038

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Flow cytometry and cell sorting for yeast viability assessment and cell selection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24278038

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003972

1 reference

1 August 2017

1 reference

1 August 2017

1 reference

PubMed ID

24278038