(Q34399881)

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Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

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scholarly article

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Europe PubMed Central

PubMed publication ID

1 August 2017

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize (English)

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Europe PubMed Central

PubMed publication ID

1 August 2017

comparative genomics

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based on heuristic

inferred from title

Phanerochaete carnosa

object named as

Phanerochaete carnosa

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based on heuristic

inferred from title

Igor V. Grigoriev

23

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1 August 2017

Erika Lindquist

11

object named as

Erika Lindquist

0 references

13

object named as

Alla Lapidus

1 reference

ORCID Public Data File 2021

Jacqueline MacDonald

object named as

Jacqueline MacDonald

2

0 references

object named as

Chiaki Hori

5

0 references

object named as

Kerrie Barry

10

0 references

Ronald P de Vries

object named as

Ronald P de Vries

20

0 references

Bernard Henrissat

7

object named as

Bernard Henrissat

1 reference

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1 August 2017

14

object named as

Susan Lucas

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1 August 2017

24

object named as

Emma R Master

1 reference

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1 August 2017

4

object named as

Asaf Salamov

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1 August 2017

12

object named as

Kurt LaButti

1 reference

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1 August 2017

22

object named as

Jagjit S Yadav

1 reference

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1 August 2017

Masahiro Samejima

17

object named as

Masahiro Samejima

1 reference

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1 August 2017

Khajamohiddin Syed

3

object named as

Khajamohiddin Syed

1 reference

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1 August 2017

Andrea L. Aerts

6

object named as

Andrea Aerts

1 reference

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1 August 2017

author name string

Hitoshi Suzuki

1

1 reference

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1 August 2017

Ad Wiebenga

8

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1 August 2017

Patricia A VanKuyk

9

1 reference

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1 August 2017

Pedro Coutinho

15

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1 August 2017

Yunchen Gong

16

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1 August 2017

Radhakrishnan Mahadevan

18

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1 August 2017

Mamdouh Abou-Zaid

19

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1 August 2017

Kiyohiko Igarashi

21

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1 August 2017

language of work or name

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publication date

2 September 2012

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1 August 2017

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1 August 2017

13

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1 August 2017

444

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1 August 2017

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

1 reference

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The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

1 reference

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Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species

1 reference

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6 July 2018

Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood

1 reference

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Cytochrome b₅ reductase-cytochrome b₅ as an active P450 redox enzyme system in Phanerochaete chrysosporium: atypical properties and in vivo evidence of electron transfer capability to CYP63A2

1 reference

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1 reference

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Cellodextrin Transport in Yeast for Improved Biofuel Production

1 reference

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Molecular and structural modeling of the Phanerochaete flavido-alba extracellular laccase reveals its ferroxidase structure.

1 reference

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Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs)

1 reference

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Genome sequence of the model mushroom Schizophyllum commune

1 reference

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1 reference

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6 July 2018

Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.

1 reference

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Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

1 reference

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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

1 reference

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Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae.

1 reference

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1 reference

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Role of P450 monooxygenases in the degradation of the endocrine-disrupting chemical nonylphenol by the white rot fungus Phanerochaete chrysosporium

1 reference

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6 July 2018

The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463431

6 July 2018

Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463431

6 July 2018

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

1 reference

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6 July 2018

Differential expression in Phanerochaete chrysosporium of membrane-associated proteins relevant to lignin degradation.

1 reference

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3463431

6 July 2018

Role of fungal peroxidases in biological ligninolysis.

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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1 reference

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KEGG for linking genomes to life and the environment

1 reference

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

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Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

1 reference

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Xylose transport studies with xylose-utilizing Saccharomyces cerevisiae strains expressing heterologous and homologous permeases.

1 reference

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Repbase Update, a database of eukaryotic repetitive elements

1 reference

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Characterization of carbohydrate-binding cytochrome b562 from the white-rot fungus Phanerochaete chrysosporium.

1 reference

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Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: evidence for gene duplications and extensive gene clustering

1 reference

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Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

1 reference

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1 reference

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1 reference

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BLAT—The BLAST-Like Alignment Tool

1 reference

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21 January 2018

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1 reference

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1 reference

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Physiological regulation, xenobiotic induction, and heterologous expression of P450 monooxygenase gene pc-3 (CYP63A3), a new member of the CYP63 gene cluster in the white-rot fungus Phanerochaete chrysosporium

1 reference

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21 January 2018

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1 reference

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27 October 2018

Identifiers

10.1186/1471-2164-13-444

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

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