(Q34401587)

English

The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

1 August 2017

The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration (English)

1 reference

Europe PubMed Central

1 August 2017

author name string

Dominic Lambert

1

1 reference

Europe PubMed Central

1 August 2017

Desirae Leipply

2

1 reference

Europe PubMed Central

1 August 2017

David E Draper

3

1 reference

Europe PubMed Central

1 August 2017

language of work or name

0 references

publication date

25 September 2010

1 reference

Europe PubMed Central

1 August 2017

number of pages

20

1 reference

based on heuristic

inferred from page(s)

Journal of Molecular Biology

1 reference

Europe PubMed Central

1 August 2017

404

1 reference

Europe PubMed Central

1 August 2017

1

1 reference

Europe PubMed Central

1 August 2017

138-157

1 reference

Europe PubMed Central

1 August 2017

Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Structure and energetics of the hydrogen-bonded backbone in protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Urea-amide preferential interactions in water: quantitative comparison of model compound data with biopolymer results using water accessible surface areas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Folding of the adenine riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Predicting the energetics of osmolyte-induced protein folding/unfolding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Crystal structure of a self-splicing group I intron with both exons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

A compact RNA tertiary structure contains a buried backbone-K+ complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

A thermodynamic framework for Mg2+ binding to RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

The osmophobic effect: natural selection of a thermodynamic force in protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Biophysical characterization of changes in amounts and activity of Escherichia coli cell and compartment water and turgor pressure in response to osmotic stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Osmolyte-driven contraction of a random coil protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Multiple tertiary interactions involving domain II of group II self-splicing introns.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Living with water stress: evolution of osmolyte systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Visualizing the higher order folding of a catalytic RNA molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Conformational changes of transfer RNA. The role of magnesium(II)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

Packing of α-helices: Geometrical constraints and contact areas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

The Stability of Globular Protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

6 July 2018

The influence of monovalent cation size on the stability of RNA tertiary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

The exclusion of glycine betaine from anionic biopolymer surface: why glycine betaine is an effective osmoprotectant but also a compatible solute

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Compaction of a bacterial group I ribozyme coincides with the assembly of core helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Preferential interactions in aqueous solutions of urea and KCl

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Persistence of native-like topology in a denatured protein in 8 M urea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Trimethylamine N-oxide-induced cooperative folding of an intrinsically unfolded transcription-activating fragment of human glucocorticoid receptor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Control of protein stability and reactions by weakly interacting cosolvents: the simplicity of the complicated.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001104

27 October 2018

Human telomerase RNA pseudoknot and hairpin thermal stability with glycine betaine and urea: preferential interactions with RNA secondary and tertiary structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling unfolded states of peptides and proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The peptide backbone plays a dominant role in protein stabilization by naturally occurring osmolytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of magnesium and potassium ions in the molecular mechanism of ribosome assembly: hydrodynamic, conformational, and thermal stability studies of 16 S RNA from Escherichia coli ribosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential inte

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Forcing thermodynamically unfolded proteins to fold

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A collapsed non-native RNA folding state

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stabilization of RNA tertiary structure by monovalent cations

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/20875423

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2010.09.043

1 reference

Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34401587&oldid=1959066359"