(Q34408908)

25275007

2 August 2017

title

Investigating the role of a backbone to substrate hydrogen bond in OMP decarboxylase using a site-specific amide to ester substitution (English)

1 reference

2 August 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Alessandro Cembran

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

5

Steven C Almo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

8

John A Gerlt

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Yuki Goto

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Alexander A Fedorov

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Jiali Gao

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Hiroaki Suga

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

English

0 references

publication date

1 October 2014

1 reference

25275007

2 August 2017

number of pages

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

issue

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

page(s)

15066-15071

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275007%20AND%20SRC:MED&resulttype=core&format=json

Substrate Distortion Contributes to the Catalysis of Orotidine 5′-Monophosphate Decarboxylase

4 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Conformational Changes in Orotidine 5′-Monophosphate Decarboxylase: A Structure-Based Explanation for How the 5′-Phosphate Group Activates the Enzyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Release factor one is nonessential in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Importance of Residues in the Orotate Binding Site

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Product deuterium isotope effects for orotidine 5'-monophosphate decarboxylase: effect of changing substrate and enzyme structure on the partitioning of the vinyl carbanion reaction intermediate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Conformational Changes in Orotidine 5′-Monophosphate Decarboxylase: “Remote” Residues That Stabilize the Active Conformation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

The thiolase reaction mechanism: the importance of Asn316 and His348 for stabilizing the enolate intermediate of the Claisen condensation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Evidence for Substrate Destabilization ,

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: effect of solvent viscosity on kinetic constants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Formation and stability of a vinyl carbanion at the active site of orotidine 5'-monophosphate decarboxylase: pKa of the C-6 proton of enzyme-bound UMP

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Synthesis of polyester by means of genetic code reprogramming

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Carbon isotope effect study on orotidine 5'-monophosphate decarboxylase: support for an anionic intermediate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Product deuterium isotope effect for orotidine 5'-monophosphate decarboxylase: evidence for the existence of a short-lived carbanion intermediate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

UCSF Chimera--a visualization system for exploratory research and analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Electrostatic stress in catalysis: Structure and mechanism of the enzyme orotidine monophosphate decarboxylase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

A proficient enzyme revisited: the predicted mechanism for orotidine monophosphate decarboxylase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Proposal for a common nomenclature for sequence ions in mass spectra of peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Site-directed mutagenesis and the role of the oxyanion hole in subtilisin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Appendix 5. Nomenclature for peptide fragment ions (positive ions).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

The low barrier hydrogen bond in enzymatic catalysis.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

OMP decarboxylase: an experimental test of electrostatic destabilization of the enzyme-substrate complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

Dissecting a charged network at the active site of orotidine-5'-phosphate decarboxylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

Activation of orotidine 5'-monophosphate decarboxylase by phosphite dianion: the whole substrate is the sum of two parts

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

QM/MM studies of the enzyme-catalyzed dechlorination of 4-chlorobenzoyl-CoA provide insight into reaction energetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

Cell-free translation reconstituted with purified components

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

A highly flexible tRNA acylation method for non-natural polypeptide synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1411772111

Crystal structures of orotidine monophosphate decarboxylase: does the structure reveal the mechanism of nature's most proficient enzyme?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210302

Flexizymes for genetic code reprogramming

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25275007

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.1411772111

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/uu4kpiaqarfqldqdd5u2rpptba

30 July 2022

release_uu4kpiaqarfqldqdd5u2rpptba

ADS bibcode

2014PNAS..11115066D

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/uu4kpiaqarfqldqdd5u2rpptba

30 July 2022

https://api.fatcat.wiki/v0/release/uu4kpiaqarfqldqdd5u2rpptba

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/uu4kpiaqarfqldqdd5u2rpptba

1 reference

30 July 2022