(Q34412019)

2 August 2017

title

Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts (English)

1 reference

2 August 2017

Frederic D Bushman

7

0 references

Kyle Bittinger

2

object named as

Kyle Bittinger

1 reference

2 August 2017

Ronald G Collman

6

1 reference

ORCID Public Data File 2021

author name string

Emily S Charlson

1

1 reference

2 August 2017

Jun Chen

3

1 reference

2 August 2017

Joshua M Diamond

4

1 reference

2 August 2017

Hongzhe Li

5

1 reference

2 August 2017

language of work or name

English

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publication date

6 September 2012

1 reference

2 August 2017

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2 August 2017

volume

7

1 reference

2 August 2017

issue

9

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2 August 2017

page(s)

e42786

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Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

6 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Pattern of distribution of Prevotella species/phylotypes associated with healthy gingiva and periodontal disease

1 reference

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Dirichlet multinomial mixtures: generative models for microbial metagenomics

6 July 2018

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Experimental and analytical tools for studying the human microbiome

6 July 2018

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Bayesian community-wide culture-independent microbial source tracking

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Metagenomic biomarker discovery and explanation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Topographical continuity of bacterial populations in the healthy human respiratory tract

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Analysis of the lung microbiome in the "healthy" smoker and in COPD

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Disordered microbial communities in the upper respiratory tract of cigarette smokers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Comparative analyses of the bacterial microbiota of the human nostril and oropharynx.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Search and clustering orders of magnitude faster than BLAST

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

QIIME allows analysis of high-throughput community sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

FastTree 2--approximately maximum-likelihood trees for large alignments

6 July 2018

1 reference

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Tropheryma whipplei in patients with pneumonia

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Disordered microbial communities in asthmatic airways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

PyNAST: a flexible tool for aligning sequences to a template alignment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Bacterial community variation in human body habitats across space and time

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Accurate determination of microbial diversity from 454 pyrosequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Colonization and infection of the respiratory tract: What do we know?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Global diversity in the human salivary microbiome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Airway inflammation and bronchial bacterial colonization in chronic obstructive pulmonary disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Defining the normal bacterial flora of the oral cavity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

6 July 2018

Estimating F-statistics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Bias in template-to-product ratios in multitemplate PCR

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Quantitative bacterial cultures of bronchoalveolar lavage fluids and protected brush catheter specimens from normal subjects.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Special precautions reduce oropharyngeal contamination in bronchoalveolar lavage for bacteriologic studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Diagnostic fiberoptic bronchoscopy and protected brush culture in patients with community-acquired pneumonia

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Oropharyngeal decontamination decreases incidence of ventilator-associated pneumonia. A randomized, placebo-controlled, double-blind clinical trial.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Bacteriology of the lower respiratory tract as determined by fiber-optic bronchoscopy and transtracheal aspiration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Pharyngeal aspiration in normal adults and patients with depressed consciousness

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Should fiberoptic bronchoscopy aspirates be cultured?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Molecular analysis of diversity within the genus Pseudomonas in the lungs of cystic fibrosis patients

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

A pilot study of quantitative aspiration in patients with symptoms of obstructive sleep apnea: comparison to a historic control group

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

Oropharyngeal or Gastric Colonization and Nosocomial Pneumonia in Adult Intensive Care Unit Patients

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3435383

A COMPARISON OF TRANSTRACHEAL ASPIRATION WITH OTHER METHODS OF DETERMINING THE BACTERIAL FLORA OF THE LOWER RESPIRATORY TRACT

9 December 2018

1 reference

12 December 2020

Bronchoalveolar lavage for diagnosing acute bacterial pneumonia

1 reference

12 December 2020

Quantitative culture of bronchoalveolar lavage fluid for the diagnosis of bacterial pneumonia

1 reference

12 December 2020

Quantitative aspiration during sleep in normal subjects

1 reference

12 December 2020

Diagnostic accuracy of protected specimen brush and bronchoalveolar lavage in nosocomial pneumonia: impact of previous antimicrobial treatments

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0042786

Identifiers

DOI

1 reference

2 August 2017

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2 August 2017

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