(Q34414963)

2 August 2017

title

Application of circular consensus sequencing and network analysis to characterize the bovine IgG repertoire (English)

1 reference

2 August 2017

Peter A Larsen

1

1 reference

2 August 2017

Timothy P L Smith

series ordinal

2

1 reference

2 August 2017

language of work or name

1 reference

14 September 2012

1 reference

2 August 2017

1 reference

2 August 2017

volume

13

1 reference

2 August 2017

page(s)

52

1 reference

Creative Commons Attribution 2.0 Generic

2 August 2017

copyright license

start time

14 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2172-13-52

0 references

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6 July 2018

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6 July 2018

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The whole-organism heavy chain B cell repertoire from Zebrafish self-organizes into distinct network features

6 July 2018

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An Insertion Mutation That Distorts Antibody Binding Site Architecture Enhances Function of a Human Antibody

6 July 2018

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Bias in the αβ T-cell repertoire: implications for disease pathogenesis and vaccination

6 July 2018

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6 July 2018

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Immunoglobulin heavy chain diversity in Pteropid bats: evidence for a diverse and highly specific antigen binding repertoire

6 July 2018

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Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

6 July 2018

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6 July 2018

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CD-HIT Suite: a web server for clustering and comparing biological sequences

6 July 2018

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Construction of single-chain Fv with two possible CDR3H conformations but similar inter-molecular forces that neutralize bovine herpesvirus 1.

6 July 2018

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A germline knowledge based computational approach for determining antibody complementarity determining regions

6 July 2018

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High-throughput sequencing of the zebrafish antibody repertoire

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Real-time DNA sequencing from single polymerase molecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Somatic hypermutations and isotype restricted exceptionally long CDR3H contribute to antibody diversification in cattle

6 July 2018

1 reference

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6 July 2018

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Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes

6 July 2018

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The intrinsic contributions of tyrosine, serine, glycine and arginine to the affinity and specificity of antibodies

6 July 2018

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Galaxy: a platform for interactive large-scale genome analysis

6 July 2018

1 reference

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Hierarchical organization of modularity in metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Incorporation of long CDR3s into V domains: implications for the structural evolution of the antibody-combining site

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Camel heavy-chain antibodies: diverse germline V(H)H and specific mechanisms enlarge the antigen-binding repertoire

6 July 2018

1 reference

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Collective dynamics of 'small-world' networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

A single predominantly expressed polymorphic immunoglobulin VH gene family, related to mammalian group, I, clan, II, is identified in cattle.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Bovine IgG repertoire is dominated by a single diversified VH gene family

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Polymorphism of the IGHG3 gene in cattle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Use of a single VH family and long CDR3s in the variable region of cattle Ig heavy chains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

The heterogeneity of bovine IgG2--VIII. The complete cDNA sequence of bovine IgG2a (A2) and an IgG1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Structure of bovine immunoglobulin constant region heavy chain gamma 1 and gamma 2 genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Diversity in the CDR3 region of V(H) is sufficient for most antibody specificities

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2172-13-52

Duplicated copies of the bovine JH locus contribute to the Ig repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2172-13-52

Extensive CDR3H length heterogeneity exists in bovine foetal VDJ rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2172-13-52

PCR strategies for isolation of the 5' end of an immunoglobulin-encoding bovine cDNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2172-13-52

Computing topological parameters of biological networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2172-13-52

High-throughput antibody sequencing reveals genetic evidence of global regulation of the naïve and memory repertoires that extends across individuals.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Somatic hypermutation leads to diversification of the heavy chain immunoglobulin repertoire in cattle.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Physical mapping of the bovine immunoglobulin heavy chain constant region gene locus.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Heavy chain V region diversity in the duck-billed platypus (Ornithorhynchus anatinus): long and highly variable complementarity-determining region 3 compensates for limited germline diversity

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

Yet Another Numbering Scheme for Immunoglobulin Variable Domains: An Automatic Modeling and Analysis Tool

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2172-13-52

Identification of specificity-determining residues in antibodies

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500647

A single VH family and long CDR3s are the targets for hypermutation in bovine immunoglobulin heavy chains

27 October 2018

1 reference

12 December 2020

Novel atypical nucleotide insertions specifically at VH-DH junction generate exceptionally long CDR3H in cattle antibodies

1 reference

12 December 2020

Fundamental characteristics of the immunoglobulin VH repertoire of chickens in comparison with those of humans, mice, and camelids

1 reference

12 December 2020

Selective constraints, amino acid composition, and the rate of protein evolution

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2172-13-52

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference