(Q34415343)

2 August 2017

Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins (English)

1 reference

2 August 2017

3

Mikhail V Matz

1 reference

2 August 2017

2

Juan A Ugalde

1 reference

2 August 2017

Belinda S W Chang

1

1 reference

PubMed ID

15865989

2 August 2017

language of work or name

English

0 references

publication date

1 January 2005

1 reference

2 August 2017

Methods in Enzymology

1 reference

2 August 2017

395

1 reference

2 August 2017

652-670

1 reference

Model of amino acid substitution in proteins encoded by mitochondrial DNA

2 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Molecular resurrection of an extinct ancestral promoter for mouse L1.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Maximum likelihood methods for detecting adaptive evolution after gene duplication.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Model misspecification and probabilistic tests of topology: evidence from empirical data sets

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Angiotensin II-forming activity in a reconstructed ancestral chymase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Synthetic gene technology: applications to ancestral gene reconstruction and structure-function studies of receptors

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Recreating ancestral proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Recreating a functional ancestral archosaur visual pigment

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Reconstructing ancestral character states: a critical reappraisal

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Total synthesis of a gene for bovine rhodopsin

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Inferring the palaeoenvironment of ancient bacteria on the basis of resurrected proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Statistical tests of models of DNA substitution.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

A novel use of equilibrium frequencies in models of sequence evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Effects of codon usage versus putative 5'-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Wavelength mutations and posttranslational autoxidation of green fluorescent protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Is the Felsenstein zone a fly trap?

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Empirical and hierarchical Bayesian estimation of ancestral states.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Potential applications and pitfalls of Bayesian inference of phylogeny

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Phylogenetic methods come of age: testing hypotheses in an evolutionary context

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Molecular Basis and Evolutionary Origins of Color Diversity in Great Star Coral Montastraea cavernosa (Scleractinia: Faviida)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Probabilistic reconstruction of ancestral protein sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Diversity and evolution of the green fluorescent protein family.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Development and use of fluorescent protein markers in living cells

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Ancestral lysozymes reconstructed, neutrality tested, and thermostability linked to hydrocarbon packing.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Family of the green fluorescent protein: journey to the end of the rainbow

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

The Assumptions and Challenges of Ancestral State Reconstructions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

MODELTEST: testing the model of DNA substitution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Expression profiling using a hexamer-based universal microarray

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Synonymous codon usage bias and the expression of human glucocerebrosidase in the methylotrophic yeast, Pichia pastoris.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Active ancestral molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Identification of essential amino acid changes in paired domain evolution using a novel combination of evolutionary analysis and in vitro and in vivo studies.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Resurrecting ancient genes: experimental analysis of extinct molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Evolution of coral pigments recreated.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Statistical methods for detecting molecular adaptation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2805%2995034-9

7 January 2021

10.1016/S0076-6879(05)95034-9

Identifiers

DOI

1 reference

2 August 2017

1 reference

PubMed ID

15865989