(Q34426349)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Mechanism of bacterial signal transduction revealed by molecular dynamics of Tsr dimers and trimers of dimers in lipid vesicles (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

author name string

Benjamin A Hall

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

publication date

20 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

9 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

volume

8

1 reference

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9 March 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

page(s)

e1002685

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

9 March 2020

copyright license

start time

20 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Improving Internal Peptide Dynamics in the Coarse-Grained MARTINI Model: Toward Large-Scale Simulations of Amyloid- and Elastin-like Peptides

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Transmembrane signal transduction in archaeal phototaxis: the sensory rhodopsin II-transducer complex studied by electron paramagnetic resonance spectroscopy.

6 July 2018

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6 July 2018

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Cardiolipin microdomains localize to negatively curved regions of Escherichia coli membranes

6 July 2018

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Lateral density of receptor arrays in the membrane plane influences sensitivity of the E. coli chemotaxis response

6 July 2018

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Chemotaxis kinase CheA is activated by three neighbouring chemoreceptor dimers as effectively as by receptor clusters

6 July 2018

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Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes

6 July 2018

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Partitioning of lipids at domain boundaries in model membranes

6 July 2018

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Release of content through mechano-sensitive gates in pressurized liposomes

6 July 2018

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The energetics of transmembrane helix insertion into a lipid bilayer.

6 July 2018

1 reference

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Charged or aromatic anchor residue dependence of transmembrane peptide tilt.

6 July 2018

1 reference

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Protein annotation and modelling servers at University College London

6 July 2018

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Changes in transmembrane helix alignment by arginine residues revealed by solid-state NMR experiments and coarse-grained MD simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

6 July 2018

The piston rises again

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Mutational analyses of HAMP helices suggest a dynamic bundle model of input-output signalling in chemoreceptors

6 July 2018

1 reference

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Role of HAMP domains in chemotaxis signaling by bacterial chemoreceptors.

6 July 2018

1 reference

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The Jpred 3 secondary structure prediction server

6 July 2018

1 reference

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Bacterial chemoreceptors: high-performance signaling in networked arrays

6 July 2018

1 reference

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Structure of the conserved HAMP domain in an intact, membrane-bound chemoreceptor: a disulfide mapping study

6 July 2018

1 reference

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Sensor complexes regulating two-component signal transduction

6 July 2018

1 reference

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6 July 2018

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Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy.

6 July 2018

1 reference

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The HAMP domain structure implies helix rotation in transmembrane signaling

6 July 2018

1 reference

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Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties

6 July 2018

1 reference

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Peptides in lipid bilayers: the power of simple models

6 July 2018

1 reference

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Conserved glycine residues in the cytoplasmic domain of the aspartate receptor play essential roles in kinase coupling and on-off switching

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Making sense of it all: bacterial chemotaxis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Side chains at the membrane-water interface modulate the signaling state of a transmembrane receptor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

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6 July 2018

1 reference

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Conformational spread in a ring of proteins: a stochastic approach to allostery

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Molecular model of a lattice of signalling proteins involved in bacterial chemotaxis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Visualization of phospholipid domains in Escherichia coli by using the cardiolipin-specific fluorescent dye 10-N-nonyl acridine orange

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Quantitative approaches to utilizing mutational analysis and disulfide crosslinking for modeling a transmembrane domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Exploring peptide-membrane interactions with coarse-grained MD simulations.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

PACKMOL: a package for building initial configurations for molecular dynamics simulations.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Using Nanodiscs to create water-soluble transmembrane chemoreceptors inserted in lipid bilayers.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Tuning a bacterial chemoreceptor with protein-membrane interactions.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Development of the signal in sensory rhodopsin and its transfer to the cognate transducer

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Molecular dynamics simulations of model trans-membrane peptides in lipid bilayers: a systematic investigation of hydrophobic mismatch

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Tryptophan residues flanking the second transmembrane helix (TM2) set the signaling state of the Tar chemoreceptor

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Automatic domain decomposition of proteins by a Gaussian Network Model.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

Proteolytic fragments identified with domains of the aspartate chemoreceptor.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3447960

From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations

27 October 2018

1 reference

12 December 2020

Dimerization of Amino Acid Side Chains: Lessons from the Comparison of Different Force Fields

1 reference

12 December 2020

Identification and localization of a methyl-accepting chemotaxis protein in Rhodobacter sphaeroides

1 reference

12 December 2020

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

1 reference

12 December 2020

G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers

1 reference

12 December 2020

DNA lipoplexes: formation of the inverse hexagonal phase observed by coarse-grained molecular dynamics simulation

1 reference

12 December 2020

Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1002685

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

DBLP publication ID

journals/ploscb/HallAS12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

PubMed publication ID

23028283

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23028283%20AND%20SRC:MED&resulttype=core&format=json