(Q34431152)

2 August 2017

title

Allosteric response and substrate sensitivity in peptide binding of the signal recognition particle (English)

1 reference

2 August 2017

Connie Y Wang

1

1 reference

2 August 2017

Thomas F Miller

series ordinal

2

1 reference

2 August 2017

language of work or name

English

0 references

publication date

18 September 2014

1 reference

Journal of Biological Chemistry

2 August 2017

published in

1 reference

2 August 2017

volume

289

1 reference

2 August 2017

issue

44

1 reference

2 August 2017

page(s)

30868-30879

1 reference

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

2 August 2017

cites work

1 reference

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6 July 2018

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Signal recognition particle-ribosome binding is sensitive to nascent chain length

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Synergistic actions between the SRP RNA and translating ribosome allow efficient delivery of the correct cargos during cotranslational protein targeting

6 July 2018

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Structural basis of signal-sequence recognition by the signal recognition particle

6 July 2018

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The Crystal Structure of the Signal Recognition Particle in Complex with Its Receptor

6 July 2018

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6 July 2018

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Sequential checkpoints govern substrate selection during cotranslational protein targeting

6 July 2018

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Recognition of a signal peptide by the signal recognition particle

6 July 2018

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Structural insights into the assembly of the human and archaeal signal recognition particles

6 July 2018

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Multiple conformational switches in a GTPase complex control co-translational protein targeting

6 July 2018

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Signal sequences activate the catalytic switch of SRP RNA.

6 July 2018

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6 July 2018

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6 July 2018

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Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Clustal W and Clustal X version 2.0

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

SRP RNA provides the physiologically essential GTPase activation function in cotranslational protein targeting

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Structure of the E. coli signal recognition particle bound to a translating ribosome.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Following the signal sequence from ribosomal tunnel exit to signal recognition particle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

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6 July 2018

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6 July 2018

1 reference

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Use of thioredoxin as a reporter to identify a subset of Escherichia coli signal sequences that promote signal recognition particle-dependent translocation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Targeting proteins to membranes: structure of the signal recognition particle.

6 July 2018

1 reference

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6 July 2018

1 reference

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A structural step into the SRP cycle

6 July 2018

1 reference

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Heterodimeric GTPase Core of the SRP Targeting Complex

6 July 2018

1 reference

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Substrate twinning activates the signal recognition particle and its receptor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Crystal structure of the complete core of archaeal signal recognition particle and implications for interdomain communication

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Crystal structure of the ribonucleoprotein core of the signal recognition particle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Crystal structure of the signal sequence binding subunit of the signal recognition particle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Protein translocation in the three domains of life: variations on a theme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Co-translational protein targeting catalyzed by the Escherichia coli signal recognition particle and its receptor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Structure of the conserved GTPase domain of the signal recognition particle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Protein transport across the eukaryotic endoplasmic reticulum and bacterial inner membranes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

VMD: visual molecular dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Signal sequences specify the targeting route to the endoplasmic reticulum membrane

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Translocation of proteins across the endoplasmic reticulum. I. Signal recognition protein (SRP) binds to in-vitro-assembled polysomes synthesizing secretory protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Signal sequences. The limits of variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

An E. coli Ribonucleoprotein Containing 4.5 S RNA Resembles Mammalian Signal Recognition Particle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215262

Dynamic switch of the signal recognition particle from scanning to targeting.

6 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Role of SRP RNA in the GTPase cycles of Ffh and FtsY.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Nonlinear scaling schemes for Lennard-Jones interactions in free energy calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Good practices in free-energy calculations

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Reversible multiple time scale molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

PLUMED: A portable plugin for free-energy calculations with molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

A Rapidly Convergent Descent Method for Minimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

An Overview of Electrostatic Free Energy Computations for Solutions and Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

The signal sequence of nascent preprolactin interacts with the 54K polypeptide of the signal recognition particle

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

Free energy perturbation calculations on binding and catalysis after mutating Asn 155 in subtilisin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.584912

The hydrophobic region of signal peptides is a determinant for SRP recognition and protein translocation across the ER membrane

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25237192

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Free energy calculations by computer simulation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25237192

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M114.584912

1 reference

2 August 2017

1 reference

2 August 2017

1 reference