(Q34432673)

2 August 2017

title

A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites (English)

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2 August 2017

3

Brunak S

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author name string

Tolstrup N

series ordinal

1

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2 August 2017

Rouzé P

series ordinal

2

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2 August 2017

language of work or name

English

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publication date

1 August 1997

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2 August 2017

published in

Nucleic Acids Research

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2 August 2017

volume

25

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2 August 2017

issue

15

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2 August 2017

page(s)

3159-3163

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Mutation of putative branchpoint consensus sequences in plant introns reduces splicing efficiency

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Hidden Markov models for sequence analysis: extension and analysis of the basic method

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Cleaning the GenBank Arabidopsis thaliana data set.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Hidden Markov models in computational biology. Applications to protein modeling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

The yeast MUD2 protein: an interaction with PRP11 defines a bridge between commitment complexes and U2 snRNP addition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

A catalogue of splice junction and putative branch point sequences from plant introns

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Information content of binding sites on nucleotide sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Human DNA TATA boxes and transcription initiation sites. A statistical study.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Sequence logos: a new way to display consensus sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Biochemical Mechanisms of Constitutive and Regulated Pre-mRNA Splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146848

Arabidopsis consensus intron sequences

6 July 2018

1 reference

12 December 2020

A functional association between the 5' and 3' splice site is established in the earliest prespliceosome complex (E) in mammals

1 reference

12 December 2020

U1 snRNP targets an essential splicing factor, U2AF65, to the 3' splice site by a network of interactions spanning the exon

1 reference

12 December 2020

Mapping of branchpoint nucleotides in mutant pre-mRNAs expressed in plant cells

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/25.15.3159

1 reference

2 August 2017

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2 August 2017

1 reference