(Q34437895)

2 August 2017

title

Gibbon genome and the fast karyotype evolution of small apes (English)

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Sante Gnerre

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Lucinda Fulton

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Lucinda Fulton

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Fernando L. Mendez

Fernando L Mendez

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Nathan H Lazar

Nathan H Lazar

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Christopher W Whelan

Christopher W Whelan

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Giorgia Chiatante

Giorgia Chiatante

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Nina V Fuchs

Nina V Fuchs

Jessica Hernandez-Rodriguez

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Jessica Hernandez-Rodriguez

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Oronzo Capozzi

Oronzo Capozzi

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Kemal Sonmez

Kemal Sonmez

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Nicoletta Archidiacono

Nicoletta Archidiacono

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Swapan Mallick

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Swapan Mallick

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Baoli Zhu

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Simon White

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Catrina Fronick

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Catrina Fronick

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Mark A Batzer

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Evan E Eichler

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James M Sikela

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Wesley C Warren

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David Reich

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Katherine S Pollard

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R Alan Harris

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ORCID Public Data File 2021

Donna Muzny

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Donna M Muzny

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Richard K Wilson

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Richard A Gibbs

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Matthew W Hahn

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Miriam K Konkel

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Kim C Worley

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Daniel Barrell

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Mark Yandell

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Jerilyn A Walker

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Marta Gut

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Lora R Lewis

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Krishna R Veeramah

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Carl Baker

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Marcos Fernandez-Callejo

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Marcos Fernandez-Callejo

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LaDeana W Hillier

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Lynne V Nazareth

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Andrew Cree

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Arian Smit

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Robert Hubley

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Brygg Ullmer

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Markus Brameier

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Devin P Locke

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Stephen Searle

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Claudio Casola

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Laura Dumas

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Anis Karimpour-Fard

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Dennis Kostka

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Zsuzsanna Izsvák

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Fabio Anaclerio

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Boudewijn ten Hallers

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Boudewijn ten Hallers

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Lucia Carbone

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John Huddleston

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Thomas J Meyer

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Christian Roos

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Kathryn Beal

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Antoine Blancher

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Craig L Bohrson

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Michael S Campbell

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Annette Damert

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Pieter J de Jong

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Ivo Gut

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Bianca Ianc

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Nina G Jablonski

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Laurel M Johnstone

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Sandra L Lee

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Yue Liu

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Kimberly A Nevonen

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Majesta O'Bleness

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Cornelia Ochis

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Gerald G Schumann

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Gabriella Skollar

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Elizabeth Terhune

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Gregg W C Thomas

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Jeffrey D Wall

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Michelle C Ward

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Sarah J Wheelan

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Larry J Wilhelm

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August E Woerner

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Michael F Hammer

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Jeffrey Rogers

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language of work or name

English

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publication date

1 September 2014

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2 August 2017

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volume

513

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2 August 2017

issue

7517

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2 August 2017

page(s)

195-201

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Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes

2 August 2017

cites work

1 reference

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The skeletal phenotype of chondroadherin deficient mice

6 July 2018

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CTCF and cohesin: linking gene regulatory elements with their targets

6 July 2018

1 reference

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Incomplete lineage sorting is common in extant gibbon genera

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

The Mad1-Mad2 balancing act--a damaged spindle checkpoint in chromosome instability and cancer

6 July 2018

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Cdk1 and Plk1 mediate a CLASP2 phospho-switch that stabilizes kinetochore-microtubule attachments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Meiotic DNA double-strand breaks and chromosome asynapsis in mice are monitored by distinct HORMAD2-independent and -dependent mechanisms

6 July 2018

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Bayesian inference of ancient human demography from individual genome sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

MAP4 and CLASP1 operate as a safety mechanism to maintain a stable spindle position in mitosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Inference of human population history from individual whole-genome sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Patterns of genetic variation within and between Gibbon species.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Testing for ancient admixture between closely related populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Comparative and demographic analysis of orang-utan genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Proteins required for centrosome clustering in cancer cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Whole chromosome instability caused by Bub1 insufficiency drives tumorigenesis through tumor suppressor gene loss of heterozygosity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Functional anatomy of the gibbon forelimb: adaptations to a brachiating lifestyle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

A microhomology-mediated break-induced replication model for the origin of human copy number variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

ConsensusPathDB--a database for integrating human functional interaction networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

hnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Human-specific gain of function in a developmental enhancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

BEAST: Bayesian evolutionary analysis by sampling trees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

A most distant intergeneric hybrid offspring (Larcon) of lesser apes, Nomascus leucogenys and Hylobates lar.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

IgH class switching and translocations use a robust non-classical end-joining pathway

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

PAML 4: phylogenetic analysis by maximum likelihood

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

A high-resolution map of synteny disruptions in gibbon and human genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Consortium for osteogenesis imperfecta mutations in the helical domain of type I collagen: regions rich in lethal mutations align with collagen binding sites for integrins and proteoglycans.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

An RNA gene expressed during cortical development evolved rapidly in humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Primate segmental duplications: crucibles of evolution, diversity and disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Role of the kinesin-2 family protein, KIF3, during mitosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Closing of the Indonesian seaway as a precursor to east African aridification around 3–4 million years ago

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4249732

Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13679

Estimating the age of retrotransposon subfamilies using maximum likelihood

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13679

Evaluation of genes involved in limb development, angiogenesis, and coagulation as risk factors for congenital limb deficiencies.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13679

21 January 2018

Identifiers

DOI

10.1038/NATURE13679

1 reference

2 August 2017

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2 August 2017

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