(Q34442158)

2 August 2017

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title

Replication and transcription: shaping the landscape of the genome (English)

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2 August 2017

Jennifer A Mitchell

3

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Cameron S. Osborne

object named as

Cameron S Osborne

4

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Peter Fraser

object named as

Peter Fraser

5

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author name string

Lyubomira Chakalova

1

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PubMed ID

16094312

2 August 2017

Emmanuel Debrand

2

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2 August 2017

1 September 2005

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2 August 2017

Nature Reviews Genetics

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2 August 2017

6

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2 August 2017

669-677

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2 August 2017

9

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https://scigraph.springernature.com/pub.10.1038/nrg1673

2 August 2017

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cites work

Epigenomic replication: linking epigenetics to DNA replication

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21 January 2018

Replicating by the clock

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Replication timing and transcriptional control: beyond cause and effect

21 January 2018

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Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

21 January 2018

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Replication timing of the human genome

21 January 2018

1 reference

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 January 2018

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Large-scale transcriptional activity in chromosomes 21 and 22

21 January 2018

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Histones and histone modifications

21 January 2018

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The nucleosome: from genomic organization to genomic regulation

21 January 2018

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Heterochromatin: silence is golden.

21 January 2018

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Replication program of active and inactive multigene families in mammalian cells

21 January 2018

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Regulation of early events in chromosome replication

21 January 2018

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Spatial and temporal dynamics of DNA replication sites in mammalian cells

21 January 2018

1 reference

Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells

21 January 2018

1 reference

Dynamics of DNA replication: an ultrastructural study

21 January 2018

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A CAF-1 dependent pool of HP1 during heterochromatin duplication

21 January 2018

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Stable chromosomal units determine the spatial and temporal organization of DNA replication.

21 January 2018

1 reference

DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters

21 January 2018

1 reference

Chromatin dynamics in interphase nuclei and its implications for nuclear structure

21 January 2018

1 reference

Chromatin motion is constrained by association with nuclear compartments in human cells.

21 January 2018

1 reference

Visualizing telomere dynamics in living mammalian cells using PNA probes

21 January 2018

1 reference

Coordination of replication and transcription along a Drosophila chromosome.

21 January 2018

1 reference

Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories

21 January 2018

1 reference

Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores

21 January 2018

1 reference

WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci

21 January 2018

1 reference

Duplication and maintenance of heterochromatin domains

21 January 2018

1 reference

DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci

21 January 2018

1 reference

An ACF1-ISWI chromatin-remodeling complex is required for DNA replication through heterochromatin

21 January 2018

1 reference

Vertebrate HoxB gene expression requires DNA replication.

21 January 2018

1 reference

Long-distance control of origin choice and replication timing in the human beta-globin locus are independent of the locus control region

21 January 2018

1 reference

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states

21 January 2018

1 reference

The replication timing program of the Chinese hamster beta-globin locus is established coincident with its repositioning near peripheral heterochromatin in early G1 phase

21 January 2018

1 reference

Spatial distribution and specification of mammalian replication origins during G1 phase

21 January 2018

1 reference

Dynamic alterations of replication timing in mammalian cells.

21 January 2018

1 reference

The pattern of replication at a human telomeric region (16p13.3): its relationship to chromosome structure and gene expression

21 January 2018

1 reference

Cis-acting sequences regulating expression of the human alpha-globin cluster lie within constitutively open chromatin

21 January 2018

1 reference

The relationship between chromosome structure and function at a human telomeric region

21 January 2018

1 reference

Asynchronous DNA replication within the human beta-globin gene locus

21 January 2018

1 reference

Developmental regulation of DNA replication timing at the human beta globin locus.

21 January 2018

1 reference

Elongation by RNA polymerase II: the short and long of it

21 January 2018

1 reference

FACT facilitates transcription-dependent nucleosome alteration

21 January 2018

1 reference

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

21 January 2018

1 reference

The Drosophila Fab-7 chromosomal element conveys epigenetic inheritance during mitosis and meiosis.

21 January 2018

1 reference

Epigenetic inheritance of active chromatin after removal of the main transactivator.

21 January 2018

1 reference

Transcriptional activation triggers deposition and removal of the histone variant H3.3.

21 January 2018

1 reference

Intergenic transcription through a polycomb group response element counteracts silencing

21 January 2018

1 reference

The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

21 January 2018

1 reference

Histone variants, nucleosome assembly and epigenetic inheritance

21 January 2018

1 reference

Histone H3.3 is enriched in covalent modifications associated with active chromatin

21 January 2018

1 reference

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

21 January 2018

1 reference

Widespread occurrence of antisense transcription in the human genome

21 January 2018

1 reference

RNA regulation: a new genetics?

21 January 2018

1 reference

Tsix transcription across the Xist gene alters chromatin conformation without affecting Xist transcription: implications for X-chromosome inactivation

21 January 2018

1 reference

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

21 January 2018

1 reference

Tsix transcription- versus RNA-based mechanisms in Xist repression and epigenetic choice.

21 January 2018

1 reference

Novel transcripts from the Ultrabithorax domain of the bithorax complex.

21 January 2018

1 reference

Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus.

21 January 2018

1 reference

Intergenic transcription and transinduction of the human beta-globin locus

21 January 2018

1 reference

Transcription defines the embryonic domains of cis-regulatory activity at the Drosophila bithorax complex

21 January 2018

1 reference

Antisense intergenic transcription in V(D)J recombination.

21 January 2018

1 reference

Genomic maps and comparative analysis of histone modifications in human and mouse

21 January 2018

1 reference

Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex

21 January 2018

1 reference

Xite, X-inactivation intergenic transcription elements that regulate the probability of choice.

21 January 2018

1 reference

Analysis of intergenic transcription in the human IL-4/IL-13 gene cluster

21 January 2018

1 reference

A human RNA polymerase II complex containing factors that modify chromatin structure

21 January 2018

1 reference

A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme

21 January 2018

1 reference

Overlapping roles for the histone acetyltransferase activities of SAGA and elongator in vivo

21 January 2018

1 reference

The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation

21 January 2018

1 reference

Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus

21 January 2018

1 reference

Ultrastructural localization of active genes in nuclei of A431 cells

21 January 2018

1 reference

Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei.

21 January 2018

1 reference

Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III.

21 January 2018

1 reference

Different populations of RNA polymerase II in living mammalian cells.

21 January 2018

1 reference

Active genes dynamically colocalize to shared sites of ongoing transcription

21 January 2018

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Transcription of individual genes in eukaryotic cells occurs randomly and infrequently

21 January 2018

1 reference

The transcription cycle of RNA polymerase II in living cells.

21 January 2018

1 reference

Multiple regimes of constrained chromosome motion are regulated in the interphase Drosophila nucleus.

21 January 2018

1 reference

Expression of alpha- and beta-globin genes occurs within different nuclear domains in haemopoietic cells.

21 January 2018

1 reference

Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development

21 January 2018

1 reference

Asynchronous replication timing of imprinted loci is independent of DNA methylation, but consistent with differential subnuclear localization

21 January 2018

1 reference

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

21 January 2018

1 reference

Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei

21 January 2018

1 reference

Long-range chromatin regulatory interactions in vivo

21 January 2018

1 reference

Looping and interaction between hypersensitive sites in the active beta-globin locus

21 January 2018

1 reference

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

21 January 2018

1 reference

Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

21 January 2018

1 reference

Protein:protein interactions and the pairing of boundary elements in vivo

21 January 2018

1 reference

Conserved CTCF insulator elements flank the mouse and human beta-globin loci

21 January 2018

1 reference

A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5' boundary area of the human beta-globin locus control region.

21 January 2018

1 reference

Reconstitution of human beta-globin locus control region hypersensitive sites in the absence of chromatin assembly.

21 January 2018

1 reference

The beta-globin nuclear compartment in development and erythroid differentiation

21 January 2018

1 reference

Multiple interactions between regulatory regions are required to stabilize an active chromatin hub.

21 January 2018

1 reference

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

21 January 2018

1 reference

Scanning Human Gene Deserts for Long-Range Enhancers

21 January 2018

1 reference

Long-range control of gene expression: emerging mechanisms and disruption in disease

21 January 2018

1 reference

Quantitation of RNA polymerase II and its transcription factors in an HeLa cell: little soluble holoenzyme but significant amounts of polymerases attached to the nuclear substructure

21 January 2018

1 reference

Predicting three-dimensional genome structure from transcriptional activity.

21 January 2018

1 reference

The topology of transcription by immobilized polymerases.

21 January 2018

1 reference

Force generation in RNA polymerase

21 January 2018

1 reference

Nongenic transcription, gene regulation and action at a distance

21 January 2018

1 reference

Position effects due to chromosome breakpoints that map approximately 900 Kb upstream and approximately 1.3 Mb downstream of SOX9 in two patients with campomelic dysplasia

21 January 2018

1 reference

The beta -globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation

21 January 2018

1 reference

Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro

21 January 2018

1 reference

Porcine myosin-VI: characterization of a new mammalian unconventional myosin

21 January 2018

1 reference

Segregation of transcription and replication sites into higher order domains

21 January 2018

1 reference

The concept of self-organization in cellular architecture

21 January 2018

1 reference

Histone modifications: combinatorial complexity or cumulative simplicity?

21 January 2018

1 reference

Interphase chromosomes undergo constrained diffusional motion in living cells

21 January 2018

1 reference

Global chromosome positions are transmitted through mitosis in mammalian cells

21 January 2018

1 reference

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

21 January 2018

1 reference

Clustering of housekeeping genes provides a unified model of gene order in the human genome

21 January 2018

1 reference

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

21 January 2018

1 reference

Heritable gene silencing in lymphocytes delays chromatid resolution without affecting the timing of DNA replication

21 January 2018

1 reference

The spatial position and replication timing of chromosomal domains are both established in early G1 phase

31 March 2020

1 reference

Intergenic transcription occurs throughout the human IL-4/IL-13 gene cluster

31 March 2020

1 reference

RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling

31 March 2020

1 reference

Visualization of focal sites of transcription within human nuclei.

31 March 2020

1 reference

Single-cell gene expression profiling

31 March 2020

1 reference

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

31 March 2020

1 reference

Definition of transcriptional promoters in the human beta globin locus control region

31 March 2020

1 reference

Transcription against an applied force

31 March 2020

1 reference

Duplicating a tangled genome

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRG1673

1 reference

PubMed ID

16094312

Dimensions Publication ID

2 August 2017

0 references

1 reference

PubMed ID

16094312